Alternatives and similar repositories for Genomic-Selection

Users that are interested in Genomic-Selection are comparing it to the libraries listed below

• cma2015 / G2P
  G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…
  ☆14Updated 8 years ago
• whussain2 / Analysis-pipeline
  ☆36Updated 3 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 8 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆54Updated 3 months ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆18Updated 4 years ago
• samuelbfernandes / simplePHENOTYPES
  Simulation of Pleiotropic, Linked and Epistatic Phenotypes
  ☆13Updated 2 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆31Updated last month
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last month
• YinLiLin / KAML
  Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
  ☆46Updated 8 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆43Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆68Updated last month
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 2 months ago
• TXiang-lab / blupADC
  blupADC:An useful tool for animal and plant breeding
  ☆31Updated last year
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 7 months ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆93Updated 2 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆109Updated 2 years ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated 3 months ago
• gdlc / BGLR-R
  ☆110Updated 2 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆136Updated last month
• whweve / IntAssoPlot
  ☆18Updated last year
• Rpedigree / pedigreeTools
  R functions related to pedigrees
  ☆14Updated 2 months ago
• ShiuLab / Manuscript_Code
  Repository for code used for publications
  ☆29Updated last month
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 3 months ago