kyclark / bioinformatics_primerLinks
Bioinformatics with Unix, bash, Make, Python, and parallel
☆22Updated 4 years ago
Alternatives and similar repositories for bioinformatics_primer
Users that are interested in bioinformatics_primer are comparing it to the libraries listed below
Sorting:
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 6 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last month
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- ☆24Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A Teaching Engine for Genomics☆12Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆21Updated 6 years ago
- ☆19Updated last year
- ☆9Updated 7 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Updated 5 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated this week
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago