Alternatives and similar repositories for reproducible-workflows

Users that are interested in reproducible-workflows are comparing it to the libraries listed below

• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 9 months ago
• koesterlab / microphaser
  ☆12Updated last year
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆13Updated 3 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 11 months ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 7 months ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 9 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated last month
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated 3 months ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• markrobinsonuzh / CrispRVariants
  ☆25Updated 4 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆19Updated this week
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 7 years ago