FredHutch / reproducible-workflowsLinks
Reproducible Workflows, curated at the Fred Hutch
β12Updated 6 years ago
Alternatives and similar repositories for reproducible-workflows
Users that are interested in reproducible-workflows are comparing it to the libraries listed below
Sorting:
- π§ Navigate single-cell RNA-seq datasets in your web browser.β29Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Dataβ35Updated 10 years ago
- RNA-seq data comprehensive data analysis toolboxβ19Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ25Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- Bioinformatics for Benched Biologistsβ22Updated 5 years ago
- β25Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq dataβ14Updated 4 years ago
- β15Updated 2 years ago
- Machine learning use cases for teachingβ13Updated 8 years ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- Building the constrained coding regions (CCR) modelβ16Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signalsβ34Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating froβ¦β36Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage formatβ15Updated 5 years ago
- interactive plots for differential expression analysisβ34Updated 2 months ago
- Explore the cancer relevance of your gene listβ51Updated 6 months ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling dataβ20Updated 4 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq dataβ24Updated 5 years ago
- This is the ensembldb development repository.β35Updated 2 weeks ago
- Phenotype detection in pooled genetic perturbation screensβ11Updated last year
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Pythonβ18Updated 8 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal dataβ15Updated this week
- Workflow management with Nextflow and nf-coreβ24Updated 7 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generatβ¦β28Updated 8 years ago
- πΆ hlabud: HLA genotype analysis in Rβ16Updated 4 months ago
- BigWig manpulation tools using libBigWig and htslibβ29Updated last year
- Differential ATAC-seq toolkitβ27Updated last year
- R Interface to the NCBI SRA metadataβ23Updated 6 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductorβ23Updated last week