seandavi / SRAdbLinks
Git mirror of Bioconductor SRAdb package
☆23Updated 7 years ago
Alternatives and similar repositories for SRAdb
Users that are interested in SRAdb are comparing it to the libraries listed below
Sorting:
- The MG-RAST Backend -- the API server☆44Updated 2 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 6 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- A Python library for reading and writing PacBio® data files☆40Updated 6 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated last year
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Updated 6 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆75Updated 5 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- ☆95Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago