seandavi / SRAdbLinks
Git mirror of Bioconductor SRAdb package
☆23Updated 7 years ago
Alternatives and similar repositories for SRAdb
Users that are interested in SRAdb are comparing it to the libraries listed below
Sorting:
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- The MG-RAST Backend -- the API server☆44Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Validate FastQ Files☆36Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- tutorials for 2015 EDAMAME☆24Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- small RNA analysis from NGS data☆37Updated 9 months ago
- Reduced Alphabet based Protein similarity Search☆41Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Code for nanopore paper☆33Updated 9 years ago
- YAMP: Yet Another Metagenomic Pipeline☆59Updated 2 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 12 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 weeks ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week