IARCbioinfo / VCF-tricks
Tip and tricks for VCF files
☆21Updated 6 years ago
Alternatives and similar repositories for VCF-tricks:
Users that are interested in VCF-tricks are comparing it to the libraries listed below
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- Genomic Association Tester☆30Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A software for calculating telomere length☆67Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated 5 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 4 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 4 years ago
- ☆21Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- ☆23Updated 3 years ago
- ☆23Updated last month