hellosunking / KtrimLinks
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
☆32Updated 5 months ago
Alternatives and similar repositories for Ktrim
Users that are interested in Ktrim are comparing it to the libraries listed below
Sorting:
- ☆51Updated 5 years ago
- Population-wide Deletion Calling☆35Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Structural variant caller☆54Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- SV genotyping with long reads☆39Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ☆47Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Structural variant caller for low-depth long-read sequencing data☆46Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago