BgeeDB / BgeeDB_RLinks
Source code of the R packge BgeeDB to use data from the Bgee database
☆16Updated 6 months ago
Alternatives and similar repositories for BgeeDB_R
Users that are interested in BgeeDB_R are comparing it to the libraries listed below
Sorting:
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated last week
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 3 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago
- Explore design matrices interactively with R/Shiny☆37Updated 4 months ago
- Code for the Recount project☆11Updated 8 months ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆21Updated this week
- Automate package and project setup for Bioconductor packages☆54Updated 5 months ago
- Modular & interactive analysis components for bioinformatics☆18Updated last week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 9 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 3 months ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 5 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- An introduction to matrix factorization and PCA and SVD.☆41Updated last year
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app☆49Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- ☆21Updated last year
- ☆18Updated 8 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago