seandavi / ci4cc-informatics-resourcesLinks
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
☆22Updated 6 years ago
Alternatives and similar repositories for ci4cc-informatics-resources
Users that are interested in ci4cc-informatics-resources are comparing it to the libraries listed below
Sorting:
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆10Updated 8 years ago
- Allele frequency filter app☆14Updated 3 years ago
- SEQSpark documentation☆18Updated 4 years ago
- PharmGKB NGS Pipeline☆17Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- ☆9Updated 8 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆11Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Package to create MOVIE Plots☆11Updated 5 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- Call regions of homozygosity and make tentative UPD calls☆11Updated 6 months ago
- Interactive table from gemini output☆10Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago