seandavi / ci4cc-informatics-resources
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
☆22Updated 6 years ago
Alternatives and similar repositories for ci4cc-informatics-resources:
Users that are interested in ci4cc-informatics-resources are comparing it to the libraries listed below
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- ☆10Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- PharmGKB NGS Pipeline☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- SEQSpark documentation☆18Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆18Updated 6 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Allele frequency filter app☆14Updated 2 years ago
- ☆9Updated 8 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated this week
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- ☆29Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 3 years ago