seandavi / ci4cc-informatics-resources
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
☆22Updated 5 years ago
Related projects: ⓘ
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- ☆10Updated 7 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Companion repo for ExAC paper, 2015☆33Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆28Updated 3 years ago
- PharmGKB NGS Pipeline☆17Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 3 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆15Updated 4 months ago
- ☆15Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated last month
- From QC to summary statistics☆14Updated 4 years ago
- ☆15Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- ☆9Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last year
- Website to analyze conflicting assertions in ClinVar☆16Updated 7 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- SEQSpark documentation☆18Updated 3 years ago
- ☆23Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago