jperera-bel / MTB-ReportView external linksLinks
The user can generate Molecular Tumor Board reports for TCGA samples
☆15Mar 21, 2020Updated 5 years ago
Alternatives and similar repositories for MTB-Report
Users that are interested in MTB-Report are comparing it to the libraries listed below
Sorting:
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 2 years ago
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆14Oct 28, 2025Updated 3 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 2 years ago
- A set of command line tools based on R and JavaScript.☆18Apr 21, 2020Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 6 years ago
- A fast, user-friendly package for self-organizing maps☆12May 15, 2025Updated 8 months ago
- ☆11Feb 1, 2023Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- This repository contains the code and other resources used in OpenAI GPT for Python Developers (2nd Edition)☆12Apr 23, 2024Updated last year
- ☆11Feb 11, 2023Updated 3 years ago
- DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/bioj…☆29Mar 27, 2013Updated 12 years ago
- Nextcloud / Owncloud CLI Webdav Client☆10Nov 20, 2022Updated 3 years ago
- ☆11May 12, 2021Updated 4 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆10Oct 20, 2020Updated 5 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- 天津医科大学，生物医学工程与技术学院，《系统生物学》课程资料☆13May 18, 2022Updated 3 years ago
- Resources for learning how to code for science☆11Dec 11, 2015Updated 10 years ago
- Computational Framework for Genome-Wide Association Studies and Meta-Studies in C/C++ with Python Interfaces☆11Oct 31, 2020Updated 5 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- NGS perl modules☆11Feb 4, 2026Updated last week
- ☆13Nov 30, 2018Updated 7 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- A FAUST wrapper-generator for ChucK Ugens☆18Updated this week
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated 10 months ago
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated 11 months ago
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 4 months ago
- SynthEHRella is a benchmarking package used for evaluating synthetic Electronic Health Records (EHR) data generation methods.☆12Sep 17, 2025Updated 4 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago