jperera-bel / MTB-ReportLinks
The user can generate Molecular Tumor Board reports for TCGA samples
☆15Updated 5 years ago
Alternatives and similar repositories for MTB-Report
Users that are interested in MTB-Report are comparing it to the libraries listed below
Sorting:
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆83Updated 6 months ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Explore and download data from the recount3 project☆36Updated 2 months ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Overview of GDC Harmonization Workflows☆30Updated 2 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 7 months ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 3 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆45Updated 7 years ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆25Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Analysis for svaseq paper☆19Updated 10 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆46Updated 2 years ago
- A catalog of appyter notebooks☆37Updated this week
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- ☆41Updated 7 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 11 months ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 5 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 6 years ago