The user can generate Molecular Tumor Board reports for TCGA samples
☆15Mar 21, 2020Updated 6 years ago
Alternatives and similar repositories for MTB-Report
Users that are interested in MTB-Report are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆15Oct 28, 2025Updated 6 months ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 3 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 11 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- ☆24Apr 15, 2024Updated 2 years ago
- Central repository for the VICC metakb web application☆14Updated this week
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 4 years ago
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆23May 25, 2019Updated 6 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 9 months ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Updated this week
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 10 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆15Updated this week
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Apr 2, 2016Updated 10 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- A package for MD, Docking and Machine learning drug discovery pipeline☆46Aug 30, 2020Updated 5 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Computational Framework for Genome-Wide Association Studies and Meta-Studies in C/C++ with Python Interfaces☆11Oct 31, 2020Updated 5 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- 天津医科大学,生物医学工程与技术学院,《系统生物学》课程资料☆13May 18, 2022Updated 3 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Imputation pipeline for Open Humans☆14Updated this week
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago