ChristopherWilks / snaptronLinks
fast webservices based query tool for large sets of genomic features
☆25Updated last month
Alternatives and similar repositories for snaptron
Users that are interested in snaptron are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆9Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago