ChristopherWilks / snaptronLinks
fast webservices based query tool for large sets of genomic features
☆25Updated 6 months ago
Alternatives and similar repositories for snaptron
Users that are interested in snaptron are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Fast fusion detection using kallisto☆79Updated 5 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆16Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago