ChristopherWilks / snaptronLinks
fast webservices based query tool for large sets of genomic features
☆25Updated 4 months ago
Alternatives and similar repositories for snaptron
Users that are interested in snaptron are comparing it to the libraries listed below
Sorting:
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago