ChristopherWilks / snaptronLinks
fast webservices based query tool for large sets of genomic features
☆25Updated 3 weeks ago
Alternatives and similar repositories for snaptron
Users that are interested in snaptron are comparing it to the libraries listed below
Sorting:
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆21Updated last month
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆9Updated 8 years ago
- a set of NGS pipelines☆24Updated last week
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago