markziemann / dee2Links
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
☆42Updated this week
Alternatives and similar repositories for dee2
Users that are interested in dee2 are comparing it to the libraries listed below
Sorting:
- An interactive web-tool for RNA-seq analysis☆68Updated 7 months ago
- Visual exploratory analysis of gene expression data☆43Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated last week
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Genomic data interpretation and visualization Workshop☆21Updated last month
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆35Updated 8 months ago
- Calculate and plot distributions of genomic ranges☆26Updated 4 months ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Transcript quantification import for modular pipelines☆140Updated 3 weeks ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago