markziemann / dee2Links
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
☆42Updated 2 weeks ago
Alternatives and similar repositories for dee2
Users that are interested in dee2 are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- An interactive web-tool for RNA-seq analysis☆69Updated 8 months ago
- ☆34Updated last week
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Transcript quantification import for modular pipelines☆141Updated last month
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated 3 weeks ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆36Updated 9 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Visual exploratory analysis of gene expression data☆43Updated last month
- Calculate and plot distributions of genomic ranges☆26Updated 6 months ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- An R interface to the MEME Suite☆52Updated 4 months ago