Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
☆41Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for dee2
Users that are interested in dee2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Nextflow Pipelines☆10Aug 15, 2026Updated 2 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 5 months ago
- Awesome resources related to Galaxy project☆12Jul 6, 2026Updated 3 months ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- ☆10Feb 22, 2018Updated 8 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 9 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 5 years ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- ☆16Jul 27, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 10 months ago
- Check strandedness of RNA-Seq fastq files☆134Aug 30, 2022Updated 4 years ago
- ☆13Updated this week
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- ☆26Jan 14, 2021Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- A tool for visualisation of gene set over-representation analysis (GSOA).☆10Jun 27, 2019Updated 7 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆23Oct 16, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 11 months ago
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 11 months ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Oct 5, 2026Updated 3 weeks ago
- Git mirror of Bioconductor SRAdb package☆24Feb 20, 2018Updated 8 years ago
- Docker container for Illumina bcl2fastq☆13Aug 7, 2024Updated 2 years ago
- ☆12Jun 18, 2022Updated 4 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆35Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Oct 15, 2026Updated 2 weeks ago
- ☆14Sep 24, 2026Updated last month
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆47Aug 28, 2026Updated 2 months ago
- Plot categorical heatmaps with seaborn☆17Aug 30, 2022Updated 4 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Curated list of bioinformatics formats and publications☆54Mar 18, 2019Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 9 years ago