markziemann / dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
☆39Updated this week
Related projects ⓘ
Alternatives and complementary repositories for dee2
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- An R interface to the MEME Suite☆46Updated last month
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Genomic data interpretation and visualization Workshop☆18Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- Reduce + Visualize Gene Ontology☆22Updated 2 weeks ago
- Statistical power studies for multi-omics experiments.☆30Updated last year
- Unsorted scripts for bioinformatics☆59Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Builds a PEP from SRA or GEO accessions☆46Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Differential Count Data Analysis Toolbox☆60Updated 9 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆27Updated 10 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆61Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- A snakemake pipeline for 10X genomics cellranger☆19Updated last week
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- ☆32Updated last week
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆52Updated last year
- create, manage, and upload track hubs for use in the UCSC genome browser☆52Updated 7 months ago
- An interactive web-tool for RNA-seq analysis☆67Updated last month
- Bioconductor package that makes BIG data pint-sized.☆20Updated 9 months ago