markziemann / dee2Links
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
☆41Updated last week
Alternatives and similar repositories for dee2
Users that are interested in dee2 are comparing it to the libraries listed below
Sorting:
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Visual exploratory analysis of gene expression data☆44Updated 3 weeks ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆21Updated 8 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- GraphBio: a shiny web app to easily perform popular visualization analysis for omics data☆33Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Quick access to gene synonyms☆29Updated last week
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Updated 10 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- A guide to running MaxQuant in Linux☆35Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- R package providing query functionality to BioMart instances like Ensembl☆43Updated last month
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆19Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated 9 months ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated 2 weeks ago
- R package for genomic feature analysis and visualization☆79Updated 7 months ago
- Builds a PEP from SRA or GEO accessions☆53Updated last week
- Reactome Pathway Analysis☆43Updated 7 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year