ropensci / phylotaRLinks
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
☆24Updated last month
Alternatives and similar repositories for phylotaR
Users that are interested in phylotaR are comparing it to the libraries listed below
Sorting:
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- An Amazing Shiny App☆17Updated 4 years ago
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- ☆21Updated last year
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- A model-based visualization method for microbiome data☆16Updated 2 years ago
- ☆17Updated 7 years ago
- A Toolbox for Manipulating Biological Sequences in R☆23Updated 3 years ago
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated 2 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated last year
- R Interfaces to Phylogenetic Software☆12Updated this week
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- ☆19Updated last week
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- Informatic Sequence Classification Trees☆14Updated 3 months ago
- STAMPS 2018 course☆15Updated 7 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated last week
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated this week
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Updated 6 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated 8 months ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated last week
- Exploring the Phylogenetic Signal in Continuous Traits☆18Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Analysis of Phylogenetics and Evolution☆71Updated 3 months ago
- a take on ordination plots using ggplot2☆65Updated last year
- ☆36Updated 10 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated 3 weeks ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- Microbial community analysis tools in R☆22Updated 3 years ago