BodenmillerGroup / SCPathology_publicationLinks
The Single-Cell Pathology Landscape of Breast Cancer
☆27Updated 5 years ago
Alternatives and similar repositories for SCPathology_publication
Users that are interested in SCPathology_publication are comparing it to the libraries listed below
Sorting:
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Updated 8 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 6 months ago
- ☆39Updated last year
- ☆36Updated last month
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆26Updated last month
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 3 months ago
- Multimodality Fusion Subtyping (Nature Communications)☆30Updated 7 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 4 months ago
- A package for the analysis of Imaging Mass Cytometry data☆13Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- ☆22Updated 3 years ago
- ☆17Updated 7 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 7 months ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆39Updated last month
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆28Updated 7 months ago
- ☆56Updated 3 years ago
- A public MuSpAn page for community discussions and issue reporting.☆17Updated last month
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆39Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Updated last year
- ☆58Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆33Updated 7 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 5 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- ☆13Updated 3 years ago
- ☆16Updated 10 months ago