BodenmillerGroup / SCPathology_publication
The Single-Cell Pathology Landscape of Breast Cancer
☆21Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SCPathology_publication
- ☆25Updated 5 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- ☆47Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆23Updated 9 months ago
- ☆33Updated 7 months ago
- ☆21Updated 2 months ago
- ☆18Updated last year
- ☆14Updated last month
- CAST package☆25Updated 3 weeks ago
- A package for the analysis of Imaging Mass Cytometry data☆12Updated 11 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆21Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆12Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Scripts from the GBM cellular states paper☆18Updated 3 years ago
- ☆20Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 6 months ago
- Spatial Cellular Estimator for Tumors☆42Updated this week
- Methods for visualization and analysis of spatially-resolved gene expression☆13Updated last week
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆33Updated 9 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- An R package for handling and analysing imaging mass cytometry data☆21Updated 3 weeks ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆19Updated this week
- ☆15Updated last year
- ☆16Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆29Updated 10 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 3 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆19Updated 2 years ago