An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
☆14May 27, 2025Updated last year
Alternatives and similar repositories for regioneR
Users that are interested in regioneR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Jun 26, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆14Feb 14, 2024Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Jun 28, 2021Updated 5 years ago
- R package for processing of GWAS output☆17Jul 9, 2024Updated last year
- ☆20Oct 4, 2023Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 5 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- ☆21Nov 15, 2024Updated last year
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 5 years ago
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 10 months ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Tools for visualizing genomics data☆72Oct 26, 2021Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆27Mar 14, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- Bioinformatics Open Source Sequence machine☆32Jun 18, 2026Updated 3 weeks ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Sep 26, 2024Updated last year
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- ☆28Mar 12, 2026Updated 3 months ago