Alternatives and similar repositories for regioneR:

Users that are interested in regioneR are comparing it to the libraries listed below

• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆27Updated 3 weeks ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 5 months ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆15Updated last year
• genemine / iread
  iread
  ☆23Updated 3 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆30Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• alexisvdb / rnaseq_coexpression
  Code for RNA-seq gene coexpression analysis
  ☆9Updated 3 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• showteeth / scfetch
  Access and Format Single-cell RNA-seq Datasets from Public Resources
  ☆34Updated 3 weeks ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆26Updated last year
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆28Updated 5 years ago
• Xinglab / rMATS-long
  ☆25Updated last month
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆19Updated 6 years ago
• zanglab / SICER2
  ☆20Updated 10 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated this week
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆25Updated this week
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆19Updated 2 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 4 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 7 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆20Updated 3 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last month
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 4 years ago