bernatgel / regioneR
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
☆13Updated last year
Alternatives and similar repositories for regioneR:
Users that are interested in regioneR are comparing it to the libraries listed below
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Trans-association between HLA and TCR-CDR3☆17Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated 3 weeks ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 3 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Read HOMER motif analysis output in R.☆16Updated 7 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 5 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- ☆21Updated 2 months ago
- Code for RNA-seq gene coexpression analysis☆9Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- HOT regions paper☆11Updated 5 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆10Updated 5 months ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 3 months ago
- ☆28Updated 4 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- SCASA: Single cell transcript quantification tool☆21Updated last year