An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
☆16Oct 29, 2026Updated last week
Alternatives and similar repositories for regioneR
Users that are interested in regioneR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Statistical And Functional Fine-mApping of GWAS Risk locI (SAFFARI)☆13Sep 2, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- SMR的笔记☆12May 6, 2024Updated 2 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- R package for scMultiMap, a statistical method for cell-type-specific mapping of enhancer-gene pairs with single-cell multimodal data☆10Jun 12, 2025Updated last year
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- Examples on how to use the karyoploteR R/Bioconductor package☆12Feb 3, 2023Updated 3 years ago
- Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)☆11May 5, 2021Updated 5 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication☆11Jun 13, 2022Updated 4 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Project bulk/single-cell RNA-seq data to given LSI space☆12Jan 17, 2022Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- An R interface to the GTEx Portal API☆13Aug 19, 2025Updated last year
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆14Feb 14, 2024Updated 2 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Jun 28, 2021Updated 5 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Oct 15, 2026Updated 3 weeks ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 6 months ago
- ☆31Mar 12, 2026Updated 7 months ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- pblab: PacBio HiFi analysis tools☆22Oct 21, 2026Updated 2 weeks ago
- Tools for visualizing genomics data☆73Oct 26, 2021Updated 5 years ago
- ☆14Feb 13, 2023Updated 3 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆379Jul 6, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A graphical user interface for omics data integrated GWAS☆11Feb 17, 2025Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆33Nov 16, 2020Updated 5 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆24Jan 3, 2025Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 4 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 6 months ago