Alternatives and similar repositories for Artemis

Users that are interested in Artemis are comparing it to the libraries listed below

• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆296Updated 7 months ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆363Updated last month
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆282Updated 4 months ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated 3 weeks ago
• ncbi / amr
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆340Updated last week
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆266Updated this week
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆447Updated 11 months ago
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆310Updated last year
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆322Updated 4 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆370Updated 5 months ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆268Updated 6 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆287Updated 2 weeks ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆249Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• stamatak / standard-RAxML
  ☆345Updated 9 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆398Updated this week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆440Updated this week
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆246Updated last week
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆223Updated this week
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆437Updated 3 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆300Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆300Updated 2 months ago
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆329Updated 8 months ago
• pcingola / SnpEff
  ☆297Updated last week
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆173Updated last month
• nf-core / mag
  Assembly and binning of metagenomes
  ☆262Updated 2 weeks ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆331Updated 9 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆386Updated 6 months ago