sanger-pathogens / ArtemisLinks
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
☆246Updated 11 months ago
Alternatives and similar repositories for Artemis
Users that are interested in Artemis are comparing it to the libraries listed below
Sorting:
- NCBI Prokaryotic Genome Annotation Pipeline☆338Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆369Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- Rapid large-scale prokaryote pan genome analysis☆346Updated 3 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆281Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- TransDecoder source☆291Updated 8 months ago
- quality filtering tool for long reads☆339Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- Rapid comparison and dereplication of genomes☆295Updated last month
- Genome Assembly and Annotation Service code☆212Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆409Updated 4 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆162Updated this week
- Gene cluster comparison figure generator☆578Updated 6 months ago
- A tool to circularize genome assemblies☆242Updated last year
- A user-friendly workflow for phylogenomics☆213Updated last week
- Scan contig files against PubMLST typing schemes☆230Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆260Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated last week
- An overview of all nanopack tools☆254Updated 2 years ago
- Sequence correction provided by ONT Research☆458Updated 2 weeks ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆312Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆510Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- Windowed Adaptive Trimming for fastq files using quality☆220Updated 8 years ago
- Java utilities for Bioinformatics☆500Updated last week
- Eukaryotic Genome Annotation Pipeline☆351Updated last week
- Bacterial ribosomal RNA predictor☆245Updated last year