sanger-pathogens / FastaqLinks
Python3 scripts to manipulate FASTA and FASTQ files
☆71Updated 3 months ago
Alternatives and similar repositories for Fastaq
Users that are interested in Fastaq are comparing it to the libraries listed below
Sorting:
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆104Updated last week
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆91Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- ☆35Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- ☆49Updated 8 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 9 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last week
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆91Updated last month