Alternatives and similar repositories for Fastaq:

Users that are interested in Fastaq are comparing it to the libraries listed below

• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆103Updated 4 months ago
• LooseLab / bulkvis
  ☆48Updated 6 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated 3 weeks ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆105Updated 2 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆55Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last week
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆65Updated last year
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆54Updated 9 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• widdowquinn / find_differential_primers
  Code for design of diagnostic PCR primers, and metabarcoding markers.
  ☆61Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• epi2me-labs / wf-basecalling
  ☆39Updated 3 weeks ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆66Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆74Updated 11 months ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• DMU-lilab / pTrimmer
  Used to trim off the primer sequence from mutiplex amplicon sequencing
  ☆21Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• epi2me-labs / wf-alignment
  ☆27Updated this week
• rrwick / Metagenomics-Index-Correction
  ☆82Updated last year