sanger-pathogens / Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
☆70Updated last week
Related projects ⓘ
Alternatives and complementary repositories for Fastaq
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆86Updated last month
- ☆46Updated 2 weeks ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆127Updated 8 months ago
- Metagenomic classification of long-read sequencing data☆61Updated this week
- A post sequencing QC tool for Oxford Nanopore sequencers☆90Updated 2 months ago
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆62Updated 11 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆57Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆78Updated last month
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- ☆76Updated 4 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆99Updated 8 months ago
- Error correction for Illumina RNA-seq reads☆63Updated 8 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆49Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- ☆34Updated last week
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆70Updated last month
- ☆24Updated this week
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆45Updated 8 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated 8 months ago
- ☆79Updated last year
- SV caller for nanopore data☆90Updated 4 years ago