sanger-pathogens / gff3toemblLinks
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
☆29Updated 6 years ago
Alternatives and similar repositories for gff3toembl
Users that are interested in gff3toembl are comparing it to the libraries listed below
Sorting:
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆63Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- GATB Minia assembly pipeline☆31Updated 2 years ago