Alternatives and similar repositories for assembly_accuracy

Users that are interested in assembly_accuracy are comparing it to the libraries listed below

• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆78Updated 4 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆50Updated 4 years ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆67Updated 3 years ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆45Updated 5 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆36Updated 4 years ago
• denglab / SeqSero2
  SeqSero2
  ☆39Updated 3 months ago
• katholt / RedDog
  ☆37Updated 3 years ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆81Updated 3 years ago
• ythuang0522 / homopolish
  High-quality Nanopore-only genome polisher
  ☆69Updated last year
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆54Updated last year
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆54Updated 2 years ago
• LomanLab / EBAME18
  Long read metagenomics practical at EBAME18
  ☆18Updated 7 years ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆33Updated 6 years ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago
• rrwick / Verticall
  Recombination-free trees
  ☆63Updated 4 months ago
• ksahlin / NGSpeciesID
  Reference-free clustering and consensus forming of long-read amplicon sequencing
  ☆66Updated 8 months ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 5 years ago
• BU-ISCIII / plasmidID
  PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…
  ☆42Updated 4 years ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆103Updated last week
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 7 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated last month
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated 3 weeks ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆97Updated last week
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆20Updated 5 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆43Updated 5 years ago