jacoblevine / PhenoGraph
Subpopulation detection in high-dimensional single-cell data
☆137Updated 4 years ago
Alternatives and similar repositories for PhenoGraph:
Users that are interested in PhenoGraph are comparing it to the libraries listed below
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- Batch balanced KNN☆157Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆206Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆143Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Test genes for Spatial Variation☆163Updated 11 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆138Updated last year
- Scanpy use cases.☆83Updated 4 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆214Updated 4 years ago
- ☆67Updated 6 years ago
- ☆127Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 10 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Bench-marking classification tools for scRNA-seq data☆185Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆146Updated 4 years ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆208Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 4 months ago
- R package for pre-processing of mass and flow cytometry data☆44Updated 2 years ago
- ☆69Updated 11 months ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆108Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- RNA velocity estimation in Python☆165Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆199Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- Convert between AnnData and SingleCellExperiment☆132Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year