jacoblevine / PhenoGraphLinks
Subpopulation detection in high-dimensional single-cell data
☆138Updated 4 years ago
Alternatives and similar repositories for PhenoGraph
Users that are interested in PhenoGraph are comparing it to the libraries listed below
Sorting:
- Batch balanced KNN☆162Updated last year
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- Scanpy use cases.☆85Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆219Updated 5 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆211Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆168Updated last year
- RNA velocity estimation in Python☆171Updated last month
- Comparison of methods for trajectory inference on single-cell data 🥇☆207Updated last year
- Test genes for Spatial Variation☆172Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- software to detect doublets☆92Updated 5 months ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆129Updated last year
- ☆69Updated last year
- ☆90Updated 4 years ago
- ☆68Updated 7 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆136Updated last week
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆231Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 7 months ago
- ☆130Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Differential expression analysis for single-cell RNA-seq data.☆198Updated 4 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 4 months ago