jacoblevine / PhenoGraphLinks
Subpopulation detection in high-dimensional single-cell data
☆137Updated 4 years ago
Alternatives and similar repositories for PhenoGraph
Users that are interested in PhenoGraph are comparing it to the libraries listed below
Sorting:
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- Batch balanced KNN☆171Updated last year
- Scanpy use cases.☆87Updated 5 years ago
- data and model repository for single-cell data☆135Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆227Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago
- ☆131Updated last year
- Test genes for Spatial Variation☆176Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆104Updated 5 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆215Updated last year
- Single-Cell Clustering Assessment Framework☆105Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- RNA velocity estimation in Python☆172Updated 5 months ago
- ☆102Updated 2 years ago
- ☆94Updated 4 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Updated 4 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆171Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆214Updated 2 years ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆130Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 7 months ago
- Multi-Omics Factor Analysis☆249Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- ☆56Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆140Updated last week
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago