Subpopulation detection in high-dimensional single-cell data
☆142Oct 22, 2020Updated 5 years ago
Alternatives and similar repositories for PhenoGraph
Users that are interested in PhenoGraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆36Apr 17, 2023Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆75Oct 5, 2020Updated 5 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Feb 8, 2020Updated 6 years ago
- scaffold☆18Aug 13, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- ☆47Jun 21, 2019Updated 7 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 4 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Mar 7, 2018Updated 8 years ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 10 months ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 4 months ago
- ☆12Mar 18, 2026Updated 5 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- ☆70May 2, 2018Updated 8 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆54Jun 8, 2020Updated 6 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,550Updated this week
- ☆13Sep 30, 2023Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 4 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆388Oct 3, 2024Updated last year
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Single cell trajectory detection☆333Jul 15, 2026Updated last month
- ☆56Apr 6, 2020Updated 6 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- ☆20Jul 20, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- Multi-Omics Factor Analysis☆268Sep 30, 2020Updated 5 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆244May 23, 2020Updated 6 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 5 months ago
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 4 years ago