jacoblevine / PhenoGraph
Subpopulation detection in high-dimensional single-cell data
☆137Updated 4 years ago
Alternatives and similar repositories for PhenoGraph:
Users that are interested in PhenoGraph are comparing it to the libraries listed below
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 9 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆214Updated 4 years ago
- Batch balanced KNN☆154Updated last year
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Scanpy use cases.☆82Updated 4 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 3 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆137Updated 11 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆205Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- ☆127Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated last month
- ☆90Updated 4 years ago
- Test genes for Spatial Variation☆161Updated 10 months ago
- Differential expression analysis for single-cell RNA-seq data.☆196Updated 3 weeks ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆124Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆110Updated 2 weeks ago
- software to detect doublets☆90Updated 2 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆223Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆199Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆136Updated last year
- Convert between AnnData and SingleCellExperiment☆132Updated this week
- RNA velocity estimation in Python☆164Updated last year
- Bench-marking classification tools for scRNA-seq data☆185Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆123Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago