saeyslab / FlowSOM_PythonLinks
The complete FlowSOM package known from R, now available in Python!
☆24Updated last week
Alternatives and similar repositories for FlowSOM_Python
Users that are interested in FlowSOM_Python are comparing it to the libraries listed below
Sorting:
- Build contrasts for models defined with formulaic☆13Updated last week
- factor models for omics data☆29Updated this week
- Multi-modal single cell analysis pipelines☆61Updated last month
- ☆30Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Updated 3 weeks ago
- SuperCell for Cytometry data☆13Updated last month
- Fit generalized linear models in python.☆28Updated 2 years ago
- Slides and Notebooks for scverse 2024☆17Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 5 months ago
- Registry for scverse ecosystem packages☆30Updated this week
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Updated 3 years ago
- Create PyTorch Datasets from AnnData☆21Updated 8 months ago
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆39Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- ☆62Updated last week
- Implementation of multiplex Leiden for analysis of spatial omics data☆14Updated last month
- ☆22Updated 5 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆43Updated last week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 10 months ago
- ☆15Updated this week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- PROGENY Python implementation☆12Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆32Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 7 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Updated 9 months ago
- ☆27Updated 6 years ago
- Interactive applications of stlearn☆15Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated 3 weeks ago