saeyslab / FlowSOM_Python
The complete FlowSOM package known from R, now available in Python!
☆14Updated this week
Alternatives and similar repositories for FlowSOM_Python:
Users that are interested in FlowSOM_Python are comparing it to the libraries listed below
- https://harpy.readthedocs.io/en/latest/☆11Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 3 months ago
- ☆23Updated 3 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆19Updated 2 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated last month
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 4 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- SuperCell for Cytometry data☆12Updated 9 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆20Updated 2 months ago
- ☆21Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆20Updated this week
- ☆20Updated 2 years ago
- Multiview Intercellular SpaTial modeling framework☆51Updated 9 months ago
- Test genes for Spatial Variation☆14Updated 3 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 7 months ago
- Flow & mass cytometry analytics.☆42Updated this week
- CAST package☆27Updated 2 months ago
- Tutorials for learning scverse☆14Updated this week
- ☆33Updated 3 months ago
- MultiMAP for integration of single cell multi-omics☆54Updated last year
- ☆25Updated 5 years ago
- ☆12Updated 7 months ago
- FISH Iterative Cell Typing☆11Updated 9 months ago
- ☆16Updated 6 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Registries for biological entities, coupled to public ontologies.☆11Updated this week
- Tutorials for multimodal omics data analysis☆13Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆24Updated 2 years ago