Alternatives and similar repositories for FlowSOM_Python

Users that are interested in FlowSOM_Python are comparing it to the libraries listed below

• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆28Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆27Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 8 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆37Updated 6 months ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆18Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 8 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 8 months ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆35Updated 6 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆18Updated 4 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 10 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 5 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆23Updated this week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆27Updated last week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 6 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆55Updated last week
• scverse / spatialdata-io
  ☆62Updated last week
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆11Updated last year
• almaan / eggplant
  ☆21Updated 2 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆79Updated 2 months ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last month
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆46Updated this week
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 5 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆21Updated last week
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 4 months ago