The complete FlowSOM package known from R, now available in Python!
☆35Sep 14, 2026Updated this week
Alternatives and similar repositories for FlowSOM_Python
Users that are interested in FlowSOM_Python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of GateNet☆15Jul 29, 2024Updated 2 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 4 years ago
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆37Jul 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Build contrasts for models defined with formulaic☆13Updated this week
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- Flow & mass cytometry analytics.☆60Updated this week
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated last month
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last month
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Using self-organizing maps for visualization and interpretation of cytometry data☆73Dec 13, 2023Updated 2 years ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- ☆27Apr 18, 2016Updated 10 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- Interactive visualization of spatial omics data☆90Sep 8, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated 3 weeks ago
- A repository for benchmarking spatial deconvolution and mapping tools☆37May 13, 2025Updated last year
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Marker Enrichment Modeling (MEM)☆13Nov 22, 2021Updated 4 years ago
- ☆37Oct 10, 2025Updated 11 months ago
- Interactive quality analysis for two-dimensional embeddings☆14Oct 14, 2025Updated 11 months ago
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 5 months ago
- ☆17Sep 11, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated 3 weeks ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆27May 13, 2025Updated last year
- ☆31Apr 26, 2024Updated 2 years ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated last year
- Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne☆17Jan 30, 2017Updated 9 years ago
- Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data☆13Apr 22, 2021Updated 5 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Sep 4, 2026Updated 2 weeks ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆26Updated this week
- Visualising data frames as funky heatmaps 📊, the Python implementation☆27Feb 6, 2025Updated last year