carpenter-singh-lab / 2023_Cimini_NatureProtocolsLinks
Optimizing the Cell Painting assay for image-based profiling
☆21Updated 5 months ago
Alternatives and similar repositories for 2023_Cimini_NatureProtocols
Users that are interested in 2023_Cimini_NatureProtocols are comparing it to the libraries listed below
Sorting:
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆52Updated 5 months ago
- ☆65Updated this week
- ☆70Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 4 years ago
- ☆40Updated 3 weeks ago
- ☆35Updated this week
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Python packaging for CPTAC data☆109Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆103Updated this week
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- A toolkit for processing multiplexed tissue images☆67Updated last week
- ☆38Updated last month
- ☆59Updated 3 weeks ago
- Reproducing the experiments of the DestVI paper☆22Updated 3 years ago
- ☆90Updated last year
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 6 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆116Updated 2 weeks ago
- ☆56Updated 3 years ago
- Python package for processing image-based profiling data☆133Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Multiple-choice microscopy pipeline☆145Updated this week
- ☆15Updated 3 years ago
- Integrated pipeline for multiplexed image analysis☆101Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆24Updated last year
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆122Updated last week