Optimizing the Cell Painting assay for image-based profiling
☆21Aug 11, 2025Updated 10 months ago
Alternatives and similar repositories for 2023_Cimini_NatureProtocols
Users that are interested in 2023_Cimini_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Feb 14, 2025Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 10 months ago
- Codebase for training the SubCell models☆23Jun 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell Painting Gallery☆133Jun 8, 2026Updated last month
- Morphological profiling using deep learning☆127Jun 20, 2026Updated 2 weeks ago
- Images and other data from the JUMP Cell Painting Consortium☆186Jun 29, 2026Updated last week
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 8 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆23Mar 28, 2023Updated 3 years ago
- The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…☆12Sep 7, 2023Updated 2 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Tool for producing ROSES compliant flow diagrams for systematic reviews and maps☆12Sep 27, 2023Updated 2 years ago
- 主要是用python进行生存分析的步骤，包括生存分析(逐步和单因素)，KM曲线、决策曲线，ROC曲线，训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The complete FlowSOM package known from R, now available in Python!☆32Jun 29, 2026Updated last week
- ☆12Oct 5, 2016Updated 9 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- ☆11Apr 5, 2022Updated 4 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 2 months ago
- UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on t…☆11Nov 4, 2020Updated 5 years ago
- A 450k tutorial in the form of an R package☆12Jul 5, 2016Updated 10 years ago
- Implementation of Decision Curve Analysis for Binary Classification☆12Sep 23, 2021Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Repo hosting the MetFrag website☆11Apr 6, 2026Updated 3 months ago
- Deep learning of an embedding mapping using t-SNE as a loss function on top of a 3-hidden-layer neural network. Use pytorch !☆20Jul 14, 2017Updated 8 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 9 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 10 months ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago
- ☆10Nov 29, 2022Updated 3 years ago
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GNN-based cancer prognosis prediction using image-derived Cell-Graphs☆14Oct 14, 2021Updated 4 years ago
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- Jupyter Notebooks for the Image Data Resource☆19Jun 25, 2026Updated last week
- A minimal example of Abductive Learning☆19Dec 6, 2023Updated 2 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 3 years ago
- Causal discovery of gene regulatory programs from single-cell genomics☆19Sep 5, 2025Updated 10 months ago
- ☆16Aug 12, 2025Updated 10 months ago