Optimizing the Cell Painting assay for image-based profiling
☆21Aug 11, 2025Updated 11 months ago
Alternatives and similar repositories for 2023_Cimini_NatureProtocols
Users that are interested in 2023_Cimini_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Feb 14, 2025Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 11 months ago
- Morphological profiling using deep learning☆129Jul 21, 2026Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆187Jul 20, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Cell Painting Gallery☆136Jul 14, 2026Updated 2 weeks ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆24Mar 28, 2023Updated 3 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…☆12Sep 7, 2023Updated 2 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- 主要是用python进行生存分析的步骤,包括生存分析(逐步和单因素),KM曲线、决策曲线,ROC曲线,训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- ☆17Oct 29, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python interface and preprocessing pipeline for the BBBC021 dataset of cellular images☆14Sep 19, 2021Updated 4 years ago
- Multiple trajectory alignment of time-series data☆14Oct 14, 2023Updated 2 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 3 months ago
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆13Mar 24, 2022Updated 4 years ago
- UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on t…☆11Nov 4, 2020Updated 5 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- A 450k tutorial in the form of an R package☆12Jul 5, 2016Updated 10 years ago
- Implementation of Decision Curve Analysis for Binary Classification☆12Sep 23, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Apr 9, 2026Updated 3 months ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- Repo hosting the MetFrag website☆11Apr 6, 2026Updated 3 months ago
- Deep learning of an embedding mapping using t-SNE as a loss function on top of a 3-hidden-layer neural network. Use pytorch !☆20Jul 14, 2017Updated 9 years ago
- ☆12Nov 24, 2022Updated 3 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 9 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 11 months ago
- Python-based Illumina methylation array analysis software☆16Jan 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GNN-based cancer prognosis prediction using image-derived Cell-Graphs☆14Oct 14, 2021Updated 4 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- ☆17Jun 5, 2024Updated 2 years ago
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- this is a implementation for knee KL score prediction.☆17Mar 24, 2022Updated 4 years ago
- Jupyter Notebooks for the Image Data Resource☆19Jun 25, 2026Updated last month
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago