Alternatives and similar repositories for funkyheatmappy

Users that are interested in funkyheatmappy are comparing it to the libraries listed below

• bioFAM / mofaflex
  factor models for omics data
  ☆30Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated this week
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆71Updated 2 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆12Updated last year
• SingleR-inc / singler-py
  Python bindings for SingleR
  ☆12Updated 6 months ago
• theislab / geome
  ☆15Updated 2 weeks ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• kaizhang / anndata-rs
  ☆39Updated 3 weeks ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 2 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated 2 years ago
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆24Updated last week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 9 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 9 months ago
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆17Updated this week
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated last month
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆30Updated 4 months ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated 2 weeks ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 3 weeks ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆22Updated 5 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆30Updated 2 weeks ago
• pachterlab / MCML
  ☆33Updated 4 years ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆61Updated last month
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated last month
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated 7 months ago
• srivarra / annsel
  A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
  ☆12Updated this week