Alternatives and similar repositories for funkyheatmappy

Users that are interested in funkyheatmappy are comparing it to the libraries listed below

• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• srivarra / annsel
  A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
  ☆10Updated last week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 5 months ago
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆17Updated this week
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆15Updated 2 weeks ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆11Updated last year
• pachterlab / MCML
  ☆33Updated 4 years ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆19Updated last month
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated 2 years ago
• kaizhang / anndata-rs
  ☆34Updated last week
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated last week
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated 3 weeks ago
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated last month
• const-ae / transformGamPoi-Paper
  ☆28Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆22Updated last week
• SingleR-inc / singler-py
  Python bindings for SingleR
  ☆12Updated 3 months ago
• BiocPy / rds2py
  Read RDS files, in Python
  ☆26Updated this week
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 4 months ago
• COMBINE-lab / pyroe
  ☆16Updated 7 months ago
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated 4 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 6 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated 2 weeks ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆61Updated last month
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated 9 months ago