Visualising data frames as funky heatmaps 📊, the Python implementation
☆27Feb 6, 2025Updated last year
Alternatives and similar repositories for funkyheatmappy
Users that are interested in funkyheatmappy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for benchmarking spatial deconvolution and mapping tools☆37May 13, 2025Updated last year
- factor models for omics data☆49Oct 5, 2026Updated last week
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago
- Build contrasts for models defined with formulaic☆13Updated this week
- Differential spatial enrichment across conditions☆30Jul 14, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆23Updated this week
- Cross-attention-based cell-cell interaction inference from ST data.☆22Sep 25, 2026Updated 2 weeks ago
- Simple scVI implementation☆13Oct 5, 2026Updated last week
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- AnnData interoperability in R☆199Oct 7, 2026Updated last week
- ☆20Sep 17, 2026Updated 3 weeks ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Oct 5, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆49Jan 28, 2026Updated 8 months ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Updated this week
- ☆50Oct 2, 2026Updated last week
- ☆20Jul 4, 2026Updated 3 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90Oct 6, 2026Updated last week
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- Tissue reassembly with generative AI☆32Jul 5, 2026Updated 3 months ago
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆32Oct 21, 2025Updated 11 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Oct 5, 2026Updated last week
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆71Apr 5, 2024Updated 2 years ago
- ☆31Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Sep 23, 2026Updated 3 weeks ago
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated last month
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- numcodecs Rust API for buffer compression☆17Sep 22, 2026Updated 3 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- ☆36Sep 7, 2026Updated last month
- Pareto Task Inference in Python☆23Oct 5, 2026Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 2 months ago
- CellPolaris☆15Jan 11, 2026Updated 9 months ago