Using self-organizing maps for visualization and interpretation of cytometry data
☆34Apr 10, 2026Updated this week
Alternatives and similar repositories for FlowSOM
Users that are interested in FlowSOM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Peak-based selection of high quality cytometry data☆20Feb 23, 2026Updated last month
- R library to normalize cytometry data☆39Jan 16, 2026Updated 2 months ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆68Dec 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The complete FlowSOM package known from R, now available in Python!☆28Updated this week
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 2 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆52Jun 8, 2020Updated 5 years ago
- An R/C++ implementation of the Growing Neural Gas algorithm☆12Mar 29, 2021Updated 5 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- R scripts to help with your flow cytometry analysis☆29Jun 17, 2022Updated 3 years ago
- A tutorial for the analysis of high-dimensional flow cytometry data☆27Aug 28, 2019Updated 6 years ago
- ☆12Jun 11, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Interactive dimensionality reduction for large datasets☆20Jul 11, 2023Updated 2 years ago
- A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of …☆17Sep 7, 2020Updated 5 years ago
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆14Mar 10, 2019Updated 7 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated 10 months ago
- ☆15Jun 4, 2023Updated 2 years ago
- ☆17Sep 13, 2023Updated 2 years ago
- Course Website☆359Updated this week
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated last year
- A package for learning about the basics of package development☆18Nov 9, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆37Oct 22, 2025Updated 5 months ago
- Talking to Docker and Singularity containers☆24Dec 27, 2023Updated 2 years ago
- The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R☆25Sep 6, 2019Updated 6 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Dec 17, 2025Updated 3 months ago
- Cytometry dATa anALYsis Tools☆75Mar 9, 2026Updated last month
- R package for large-scale similarity/distance computation☆29Feb 27, 2026Updated last month
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆14Jun 1, 2020Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- RapiDoc UI integration for R☆14Nov 17, 2023Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- ☆21Dec 23, 2024Updated last year
- A lightweight and flexible analysis pipeline☆12Updated this week
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆14Dec 27, 2023Updated 2 years ago