saeyslab / FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
☆27Updated last month
Alternatives and similar repositories for FlowSOM:
Users that are interested in FlowSOM are comparing it to the libraries listed below
- Cell type pipes for R☆51Updated last year
- An r package that works as a wrapper to homologene☆45Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 4 months ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆17Updated last week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 6 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- ☆55Updated 4 years ago
- Various utility functions for Seurat single-cell analysis☆47Updated 5 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆17Updated 5 years ago
- ☆50Updated 7 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 8 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- An R package for handling and analysing imaging mass cytometry data☆26Updated 6 months ago
- ☆60Updated 5 years ago
- ☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 months ago
- Peak-based selection of high quality cytometry data☆16Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- R package for semi-supervised single-cell data integration☆81Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year