FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
☆34Jun 16, 2022Updated 3 years ago
Alternatives and similar repositories for FlowSOM
Users that are interested in FlowSOM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 7 months ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- ☆38Mar 24, 2023Updated 3 years ago
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆69Dec 13, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆21Nov 4, 2025Updated 7 months ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 7 months ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆57Nov 5, 2025Updated 7 months ago
- 达观杯“文本智能处理挑战赛”☆10Aug 23, 2018Updated 7 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- Jupyter Scatter Tutorial (that was first presented at SciPy '23)☆23May 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆29Jan 4, 2024Updated 2 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learn…☆11May 19, 2021Updated 5 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- ☆11Jul 6, 2023Updated 2 years ago
- ☆45Aug 13, 2024Updated last year
- ☆14Aug 13, 2023Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Deep Clustering Learning☆12Aug 8, 2019Updated 6 years ago
- Exploring retrieval systems for language models☆14Apr 12, 2025Updated last year
- ☆25Sep 2, 2024Updated last year
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆24Sep 9, 2017Updated 8 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- ☆14Jul 11, 2023Updated 2 years ago
- The new Reactome REST API to access the data☆11May 22, 2026Updated 2 weeks ago
- rna2seg☆25May 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/☆13Apr 6, 2026Updated 2 months ago
- Conda Environment MAnager, a library to execute code in isolated environments.☆23Jun 2, 2026Updated last week
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆215Mar 30, 2026Updated 2 months ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- A tutorial on learned non-adversarial invariance in neural networks☆14Dec 8, 2019Updated 6 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 2 months ago
- This is the repo for constructing a comprehensive and rigorous evaluation framework for LLM calibration.☆13Apr 9, 2024Updated 2 years ago