ylab-hi / pxblatLinks
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
☆17Updated 2 weeks ago
Alternatives and similar repositories for pxblat
Users that are interested in pxblat are comparing it to the libraries listed below
Sorting:
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆69Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Merging paired-end reads and removing adapters☆46Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Reference genome resource manager☆74Updated last year
- seqfu - Sequece Fastx Utilities☆120Updated this week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated this week
- Efficiently read and write sequencing data from Python☆67Updated last month
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRA☆113Updated 2 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- Creating a simple Docker image to help perform comparisons for FASTQ compression☆37Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- Making bioinformatics fun again☆74Updated 4 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆59Updated 4 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 3 weeks ago