PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
☆18Jun 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for pxblat
Users that are interested in pxblat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jun 2, 2026Updated last month
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated 2 years ago
- Unix table column and row manipulation using column names☆12Jun 17, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment☆22Jun 26, 2026Updated last week
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆22Jul 28, 2025Updated 11 months ago
- Single Cell RNA PolyA Site Discovery☆11Jun 17, 2026Updated 3 weeks ago
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 3 months ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆19Jun 21, 2026Updated 2 weeks ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆24Jul 1, 2026Updated last week
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- AngularJS filters wrapping the 'humanize' library☆10Jul 30, 2015Updated 10 years ago
- Take command of your set enrichment analyses.☆23Updated this week
- Irmin website☆12Feb 26, 2026Updated 4 months ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Jun 16, 2026Updated 3 weeks ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- screenlamp is a Python toolkit for hypothesis-driven virtual screening☆24Mar 19, 2018Updated 8 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆59May 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- JavaScript Sequence Alignment Viewer☆11Mar 25, 2022Updated 4 years ago
- genvenn is a D3js project to visualise list/set data comparisons with standard symmetric venn diagrams. The project is aimed at providing…☆12Jun 28, 2017Updated 9 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 5 months ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Jun 24, 2026Updated 2 weeks ago
- Analyse RNA feature distributions.☆20Dec 16, 2024Updated last year
- Efficient data structures and IO for whole slide image analysis☆27Jun 20, 2026Updated 2 weeks ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆36Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Semiautomated layout of RNA tertiary structure diagrams☆16Feb 26, 2025Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated 3 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆19Feb 26, 2026Updated 4 months ago
- End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.☆42Jul 1, 2026Updated last week
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago