Alternatives and similar repositories for snakemake-parallel-bwa

Users that are interested in snakemake-parallel-bwa are comparing it to the libraries listed below

• brentp / bigwig-nim

  View on GitHub
  command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
  ☆16May 2, 2020Updated 5 years ago
• AndersenLab / IBiS-Bootcamp

  View on GitHub
  ☆40Sep 14, 2016Updated 9 years ago
• waldronlab / ProjectAsPackage

  View on GitHub
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Mar 30, 2020Updated 5 years ago
• ryanlayer / ssshtest

  View on GitHub
  Stupid Simple (ba)Sh Testing - A functional software testing framwork
  ☆23Nov 8, 2023Updated 2 years ago
• shenglin-liu / vcf2sfs

  View on GitHub
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Feb 13, 2020Updated 6 years ago
• iqbal-lab / cortex

  View on GitHub
  reference free variant assembly
  ☆34Jul 14, 2023Updated 2 years ago
• base2genomics / batchit

  View on GitHub
  simple jobs submission via command-line for AWS batch
  ☆80May 21, 2019Updated 6 years ago
• fredhutchio / intro-bioinformatics

  View on GitHub
  Website and slides for intro to bioinformatics class at Fred Hutch
  ☆13Jun 4, 2018Updated 7 years ago
• grbot / 16SrRNA-hex-tutorial

  View on GitHub
  16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
  ☆11Jan 15, 2021Updated 5 years ago
• nkrumm / s3proxy

  View on GitHub
  S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.
  ☆13Apr 2, 2014Updated 11 years ago
• StevenMaude / epo-bin

  View on GitHub
  Automated collection of EPO.BIN for Garmin GPS watches; latest download from GitHub in link below.
  ☆10Updated this week
• adkelley / prolog-starter

  View on GitHub
  A Starter Template for SWI-Prolog Projects
  ☆10Jun 1, 2020Updated 5 years ago
• trcook / my_reading_list

  View on GitHub
  A list of various articles that I find helpful for reading about deep learning, forecasting, or macroeconomics
  ☆16May 8, 2018Updated 7 years ago
• brentp / gsort

  View on GitHub
  sort genomic data
  ☆36Nov 7, 2025Updated 3 months ago
• ngs-docs / 2015-shell-genomics

  View on GitHub
  Lesson for the shell for genomics
  ☆10Jan 12, 2021Updated 5 years ago
• oleksandr / fbp

  View on GitHub
  A Go parser for .FBP DSL language from NoFlo
  ☆14Jul 16, 2014Updated 11 years ago
• dtm2451 / ProgressiveHematopoiesis

  View on GitHub
  Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.
  ☆12May 3, 2023Updated 2 years ago
• danielecook / gg

  View on GitHub
  Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!
  ☆11Dec 20, 2020Updated 5 years ago
• AMRverse / ESGEM-AMR

  View on GitHub
  This is the webpage of the ESGEM-AMR Working Group
  ☆15Feb 6, 2026Updated last week
• willem-stock / CONCOMPRA

  View on GitHub
  consensus approach for community profiling with nanopore amplicon sequencing data
  ☆15Sep 30, 2024Updated last year
• MDU-PHL / mlstdb

  View on GitHub
  A Python package to update the MLST database for the mlst tool.
  ☆18Jan 16, 2026Updated 3 weeks ago
• Sage-Bionetworks-Challenges / ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools

  View on GitHub
  Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge
  ☆15Dec 10, 2015Updated 10 years ago
• shuzhao-li / BTM

  View on GitHub
  Blood Transcription Modules for interpreting blood transcriptomics data
  ☆11Nov 25, 2024Updated last year
• Simon-Coetzee / StatePaintR

  View on GitHub
  ☆10Jan 8, 2018Updated 8 years ago
• callumsmits / rt1

  View on GitHub
  Software to make and render molecular movie animations
  ☆11Aug 3, 2019Updated 6 years ago
• tplinderoth / PopGenomicsTools

  View on GitHub
  Programs for performing various population genetic analyses
  ☆11Dec 2, 2024Updated last year
• Aperta-project / Aperta

  View on GitHub
  A platform for managing the submission and review of research outputs
  ☆10Dec 14, 2022Updated 3 years ago
• Zilong-Li / BioScripts

  View on GitHub
  Cool Bioinformatics Scripts
  ☆12May 21, 2024Updated last year
• kioopi / extedit

  View on GitHub
  Open an editor as part of the interface of a command line tool. Think `git rebase -i`
  ☆10Nov 18, 2018Updated 7 years ago
• malthesr / winsfs

  View on GitHub
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆14May 19, 2023Updated 2 years ago
• mcapuccini / SparkNow

  View on GitHub
  Deploy Spark on OpenStack. Now!
  ☆11Feb 16, 2018Updated 7 years ago
• uio-bmi / pyvg

  View on GitHub
  Importing vg json graphs to Python data structures.
  ☆12Nov 11, 2020Updated 5 years ago
• spundhir / PARE

  View on GitHub
  PARE: a computational method to Predict Active Regulatory Elements
  ☆11Aug 8, 2025Updated 6 months ago
• sparkslabs / kamaelia

  View on GitHub
  Kamaelia is a toolset that had the aim of making working with concurrency simple and reusable. It is now retired in favour of Guild. (Thi…
  ☆15Aug 17, 2025Updated 5 months ago
• genomic-medicine-sweden / jasen

  View on GitHub
  Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
  ☆12Feb 6, 2026Updated last week
• munch-group / genomic-thinking

  View on GitHub
  Course in population genomics at BiRC
  ☆12Updated this week
• LieberInstitute / megadepth

  View on GitHub
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Dec 12, 2024Updated last year
• bhklab / CREAM

  View on GitHub
  CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…
  ☆12Feb 11, 2021Updated 5 years ago
• MHH-RCUG / nf_wochenende

  View on GitHub
  A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
  ☆15Dec 14, 2024Updated last year