inodb / snakemake-parallel-bwaLinks
A Snakefile to parallelize bwa.
☆13Updated 12 years ago
Alternatives and similar repositories for snakemake-parallel-bwa
Users that are interested in snakemake-parallel-bwa are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Adapters for trimming☆30Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- BigWig and BAM utilities☆99Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- ☆51Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- ☆78Updated 11 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Detect novel (and reference) STR expansions from short-read data☆68Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago