inodb / snakemake-parallel-bwaLinks
A Snakefile to parallelize bwa.
☆13Updated 12 years ago
Alternatives and similar repositories for snakemake-parallel-bwa
Users that are interested in snakemake-parallel-bwa are comparing it to the libraries listed below
Sorting:
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 15 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆63Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated last month
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Evolutionary Transcriptomics with R☆48Updated last month
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- ☆51Updated 6 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago