walaj / SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
☆133Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for SeqLib
- ABRA2☆91Updated last year
- Structural variation and indel detection by local assembly☆236Updated this week
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- NEAT read simulation tools☆95Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆192Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Long read aligner☆113Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆192Updated 3 years ago
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- ☆111Updated last week
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- SV caller for nanopore data☆90Updated 4 years ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago
- Genome inference from a population reference graph☆93Updated 2 years ago
- VCF-kit: Assorted utilities for the variant call format☆123Updated 3 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆107Updated 3 years ago
- Find all significant local alignments between reads☆139Updated 4 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- A tool for somatic structural variant calling using long reads☆105Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆207Updated 3 months ago