walaj / SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
☆137Updated 7 months ago
Alternatives and similar repositories for SeqLib:
Users that are interested in SeqLib are comparing it to the libraries listed below
- ABRA2☆92Updated 2 years ago
- Structural variation and indel detection by local assembly☆244Updated 2 weeks ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- ☆119Updated 4 months ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- Tools for processing and analyzing structural variants.☆151Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- ☆93Updated 2 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- NEAT read simulation tools☆98Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- The Platinum Genomes Truthset☆86Updated 7 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆138Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- A tool for profiling long STRs from short reads☆96Updated 3 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- VarDict☆194Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago