Alternatives and similar repositories for SeqLib

Users that are interested in SeqLib are comparing it to the libraries listed below

• mozack / abra2
  ABRA2
  ☆95Updated 3 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆90Updated 5 years ago
• statgen / bamUtil
  ☆92Updated 4 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆79Updated 2 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆107Updated 5 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆204Updated 4 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated last year
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆74Updated 9 years ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆251Updated 4 months ago
• MikkelSchubert / adapterremoval
  AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
  ☆114Updated this week
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 3 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆110Updated 3 months ago
• parklab / bamsnap
  ☆122Updated 6 months ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆138Updated 6 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 5 months ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆102Updated last month
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆99Updated 3 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆151Updated 2 weeks ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆115Updated 7 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year
• relipmoc / skewer
  ☆96Updated 3 years ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆136Updated 4 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆96Updated 10 months ago