Alternatives and similar repositories for maximum-likelihood-relatedness-estimation

Users that are interested in maximum-likelihood-relatedness-estimation are comparing it to the libraries listed below

• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 weeks ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• xa6xa6 / metaOthello
  ☆15Updated 7 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 2 months ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated 6 months ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• mjsull / Contiguity
  Tool for visualising assemblies.
  ☆17Updated 10 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 3 months ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• seqan / vaquita
  Identification of structural variations
  ☆12Updated 3 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 4 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated 2 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 7 years ago
• ANGSD / NgsRelate
  ☆44Updated 8 months ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 9 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆41Updated 4 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆36Updated 2 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆20Updated 5 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆31Updated 4 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆49Updated 8 years ago
• jfarek / alignstats
  Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
  ☆19Updated 11 months ago