brentp / indelopeLinks
find large indels (in the blind spot between GATK/freebayes and SV callers)
☆39Updated 7 years ago
Alternatives and similar repositories for indelope
Users that are interested in indelope are comparing it to the libraries listed below
Sorting:
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆68Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- a string to graph aligner☆41Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆31Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- The integrated pipeline for Indel detection☆17Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- 10x Genomics Reads Simulator☆46Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago