Numerical Encoding for Human Genetic Variants
☆43Jun 8, 2023Updated 3 years ago
Alternatives and similar repositories for variantkey
Users that are interested in variantkey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- use the noise☆14Apr 15, 2020Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Nov 8, 2023Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Oct 23, 2026Updated last week
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆60Oct 29, 2023Updated 3 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Feb 23, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- using all the bits for echt rapid variant annotation and filtering☆166Jul 22, 2026Updated 3 months ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆30Oct 22, 2026Updated last week
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 6 months ago
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- A fast Python library for VCF files leveraging Cython for speed.☆54Mar 27, 2018Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- ☆25Oct 22, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- ☆16Aug 14, 2020Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- horizontal pileup☆16Sep 1, 2026Updated last month
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 6 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago