genomics-dev / variantkeyLinks
Numerical Encoding for Human Genetic Variants
☆42Updated 2 years ago
Alternatives and similar repositories for variantkey
Users that are interested in variantkey are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- sort genomic data☆36Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- ☆36Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- (WIP) best-practices workflow for rare disease☆62Updated last year
- ☆23Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago