ryanlayer / ssec2Links
Stupid Simple Elastic Compute Cloud
☆16Updated last year
Alternatives and similar repositories for ssec2
Users that are interested in ssec2 are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Response to blog post about Salmon☆37Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆14Updated last month
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆22Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- ☆16Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago