ryanlayer / ssec2Links
Stupid Simple Elastic Compute Cloud
☆16Updated last year
Alternatives and similar repositories for ssec2
Users that are interested in ssec2 are comparing it to the libraries listed below
Sorting:
- Response to blog post about Salmon☆37Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆43Updated 9 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆14Updated 2 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- ☆16Updated last year
- ☆12Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 5 months ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 months ago