ryanlayer / ssec2
Stupid Simple Elastic Compute Cloud
☆16Updated last year
Alternatives and similar repositories for ssec2:
Users that are interested in ssec2 are comparing it to the libraries listed below
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆37Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- ☆43Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆22Updated 8 years ago
- ☆21Updated last week
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 8 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago