gmarcais / compact_vectorLinks
Bit packed vector of integral values
☆28Updated 10 months ago
Alternatives and similar repositories for compact_vector
Users that are interested in compact_vector are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆26Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 5 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- A tool for merging large BWTs☆25Updated 5 years ago
- Efficient construction of the BWT using string compression☆20Updated 6 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated last month
- Implementation of a Backpack Quotient Filter☆13Updated 5 months ago
- Dynamic succinct/compressed data structures☆112Updated this week
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆83Updated last year
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- Low memory multithreaded hash table☆24Updated 10 years ago
- Ultra fast MSD radix sorter☆10Updated 5 years ago
- ☆26Updated 2 months ago
- Generic hash table library in C☆36Updated 7 months ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Updated 5 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 9 months ago
- ♥ Essential Functions for DNA Manipulation☆20Updated 6 months ago
- Simple succinct data structures (in Rust)☆51Updated this week
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- R-Index-F Library for Pattern Matching☆12Updated last year
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆56Updated last year
- Succinct Data Structure Library 3.0☆99Updated this week
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆20Updated 2 months ago