gmarcais / compact_vectorLinks
Bit packed vector of integral values
☆28Updated 10 months ago
Alternatives and similar repositories for compact_vector
Users that are interested in compact_vector are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆87Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆26Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 4 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Dynamic succinct/compressed data structures☆112Updated last year
- A tool for merging large BWTs☆25Updated 5 years ago
- Fast Approximate Pattern Matching using Search Schemes☆16Updated last month
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- ♥ Essential Functions for DNA Manipulation☆20Updated 5 months ago
- libstrbuf: A powerful string library for C☆17Updated 9 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆34Updated 3 weeks ago
- Efficient construction of the BWT using string compression☆20Updated 6 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- Implementation of a Backpack Quotient Filter☆13Updated 4 months ago
- Low memory multithreaded hash table☆24Updated 10 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆55Updated last year
- ☆25Updated last month
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆20Updated 2 months ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Static Huffman coding☆10Updated 8 years ago
- Succinct Data Structure Library 3.0☆99Updated last week
- Simple succinct data structures (in Rust)☆51Updated last year
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Updated 5 months ago
- Generic hash table library in C☆36Updated 6 months ago
- Fast C functions for the computing the positional popcount (pospopcnt).☆55Updated 5 years ago
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago