Alternatives and similar repositories for compact_vector

Users that are interested in compact_vector are comparing it to the libraries listed below

• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 4 years ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Updated 10 months ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 4 years ago
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆85Updated last week
• drnatebrown / r-index-f
  R-Index-F Library for Pattern Matching
  ☆13Updated 10 months ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• marco-oliva / pfp
  Prefix Free Parsing
  ☆8Updated last year
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆29Updated this week
• Poyias / mBonsai
  Compact Tree Representation
  ☆16Updated 8 years ago
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 7 years ago
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆15Updated 7 years ago
• dominikkempa / fsais
  External memory suffix array construction using inducing
  ☆11Updated 4 years ago
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆12Updated 2 weeks ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 2 weeks ago
• alshai / Big-BWT
  modified from gitlab.com/manzai/Big-BWT to support fasta files
  ☆9Updated 4 months ago
• gvinciguerra / la_vector
  🔶 Compressed bitvector/container supporting efficient random access and rank queries
  ☆43Updated 9 months ago
• kloetzl / libdna
  ♥ Essential Functions for DNA Manipulation
  ☆20Updated last week
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆81Updated last year
• jamshed / CaPS-SA
  Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
  ☆13Updated last week
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• noporpoise / string_buffer
  libstrbuf: A powerful string library for C
  ☆17Updated 8 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 5 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆50Updated last year
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆15Updated 4 years ago
• 1ykos / patchmap
  A fast and memory efficient hashmap using sorting to resolve collisions
  ☆43Updated 4 years ago