DecodeGenetics / BamHash
☆37Updated 4 years ago
Alternatives and similar repositories for BamHash:
Users that are interested in BamHash are comparing it to the libraries listed below
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- ☆26Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Integrated Variant Caller☆17Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Hemang Parikh☆11Updated 9 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 8 months ago
- gvcf aggregation tool☆12Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- sort genomic data☆35Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago