lh3 / readfq
Fast multi-line FASTA/Q reader in several programming languages
☆172Updated 3 years ago
Related projects: ⓘ
- Match up paired end fastq files quickly and efficiently.☆139Updated 3 months ago
- Quality control for MinION sequencing data☆209Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- Genome browser and variant annotation☆257Updated last week
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆102Updated last week
- A minimap2 frontend for PacBio native data formats☆170Updated 3 months ago
- ☆184Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Updated 2 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆140Updated 7 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆189Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆89Updated last week
- ABRA2☆90Updated last year
- Annotation and Ranking of Structural Variation☆210Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆123Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆143Updated 9 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆170Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆187Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆175Updated 4 months ago
- ☆110Updated 2 years ago
- ☆164Updated 5 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆84Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- An efficient FASTQ manipulation suite☆135Updated 4 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆125Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆125Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 3 years ago
- An overview of all nanopack tools☆207Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆114Updated 6 years ago