lh3 / readfqLinks
Fast multi-line FASTA/Q reader in several programming languages
☆176Updated 4 years ago
Alternatives and similar repositories for readfq
Users that are interested in readfq are comparing it to the libraries listed below
Sorting:
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- ☆122Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 2 weeks ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- ABRA2☆95Updated 3 years ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆118Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- Small utilities for working with fastq sequence files.☆123Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆236Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆218Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago