clintval / genome-browser
A lightweight Python graphing API for genomic features
☆15Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for genome-browser
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 5 months ago
- blast, shmlast☆21Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 6 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- sort genomic data☆35Updated 4 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A JBrowse plugin for plotting multiple bigwig subtracks☆12Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Analysis toolkit and programming library for k-mer profiles☆30Updated 3 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- ☆28Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Python bindings for Bifrost with a NetworkX compatible API☆27Updated last year