clintval / genome-browser
A lightweight Python graphing API for genomic features
☆15Updated 2 years ago
Alternatives and similar repositories for genome-browser:
Users that are interested in genome-browser are comparing it to the libraries listed below
- Python bindings to minimap2☆16Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 8 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 5 months ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- What's The Function of these genes?☆22Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- reference free variant assembly☆32Updated last year
- Hitting associations with k-mers☆46Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Analysis toolkit and programming library for k-mer profiles☆30Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- ☆28Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago