CoreArray / PySeqArrayLinks
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
☆14Updated 8 years ago
Alternatives and similar repositories for PySeqArray
Users that are interested in PySeqArray are comparing it to the libraries listed below
Sorting:
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Variant call adjudication☆16Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ☆22Updated last year
- Python bindings to minimap2☆16Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- Structural variant pipeline☆17Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Benchmark structural variant calls against a reference set☆17Updated 10 months ago
- Location of public benchmarking; primarily final results☆18Updated 6 months ago
- horizontal pileup☆16Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Sample Contamination Estimate from VCF☆20Updated 9 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 11 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago