CoreArray / PySeqArrayLinks
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
☆14Updated 7 years ago
Alternatives and similar repositories for PySeqArray
Users that are interested in PySeqArray are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆22Updated last year
- Integrated Variant Caller☆17Updated 7 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆21Updated last month
- ☆9Updated 3 years ago
- drunk on perbase pileups and lua expressions☆18Updated 3 weeks ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Hemang Parikh☆11Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year