PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
☆14Aug 25, 2017Updated 8 years ago
Alternatives and similar repositories for PySeqArray
Users that are interested in PySeqArray are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- ☆15Jan 16, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Mar 30, 2026Updated last week
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 7 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Nov 8, 2023Updated 2 years ago
- Dataframe for Nim☆15Jul 25, 2019Updated 6 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Hey, I bring my coffee with me. Here's what I use.☆14Mar 21, 2018Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 3 months ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- A fast and memory-efficient k-mer counter with GPU-support☆38Oct 26, 2020Updated 5 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)☆20Dec 17, 2025Updated 3 months ago
- ☆12Feb 19, 2017Updated 9 years ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 9 months ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Reader and writer of HDF5 files☆18Jul 15, 2017Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆15Aug 14, 2020Updated 5 years ago