CoreArray / PySeqArray
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
☆14Updated 7 years ago
Alternatives and similar repositories for PySeqArray
Users that are interested in PySeqArray are comparing it to the libraries listed below
Sorting:
- Sample Contamination Estimate from VCF☆19Updated 6 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural variant pipeline☆17Updated 4 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Mutation rate analysis of autosomal loci☆14Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- ☆16Updated 3 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 3 weeks ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Evaluation of phasing performance☆22Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- ☆22Updated last year
- ☆21Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Benchmark structural variant calls against a reference set☆17Updated 6 months ago
- Location of public benchmarking; primarily final results☆18Updated 2 months ago