fanzheng10 / HiDeFLinks
HiDeF (Hierarchical community Decoding Framework)
☆15Updated last year
Alternatives and similar repositories for HiDeF
Users that are interested in HiDeF are comparing it to the libraries listed below
Sorting:
- Fit generalized linear models in python.☆28Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated 2 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆20Updated 4 years ago
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- Multi-omics factor analysis v2☆49Updated 11 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- A python package for chromVAR☆30Updated 2 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- ☆28Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- ☆23Updated 8 months ago
- ☆33Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 11 months ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- ☆18Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago