fanzheng10 / HiDeF
HiDeF (Hierarchical community Decoding Framework)
☆14Updated last year
Alternatives and similar repositories for HiDeF:
Users that are interested in HiDeF are comparing it to the libraries listed below
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- A Python package for gene network analysis☆32Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆23Updated 3 weeks ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- ☆20Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Genomic sequence preprocessing toolkit☆12Updated last week
- Variant impact phenotyping using Perturb-seq☆9Updated last year
- A python package for chromVAR☆27Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆33Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Information-based dimensionality reduction☆29Updated 4 months ago
- ☆25Updated 3 months ago
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- ☆24Updated 3 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 8 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Code and example of the D-SPIN framework☆22Updated last week
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last year