fanzheng10 / HiDeFView external linksLinks
HiDeF (Hierarchical community Decoding Framework)
☆15Jan 30, 2024Updated 2 years ago
Alternatives and similar repositories for HiDeF
Users that are interested in HiDeF are comparing it to the libraries listed below
Sorting:
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- Biological Network Integration using Convolutions☆64Jan 17, 2024Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Code for PromptNet☆16Jan 29, 2025Updated last year
- development of network co-localization tool☆14Updated this week
- Kinship In Mixed Model Analysis of RNA-seq☆14Apr 14, 2025Updated 10 months ago
- ☆14Jun 4, 2023Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- ☆17Nov 19, 2024Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 3 months ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Network annotation visualization☆18May 21, 2025Updated 8 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆34Dec 2, 2025Updated 2 months ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Recurrent Variational Auto gene encoder☆20Jan 12, 2023Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated 3 weeks ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 8 months ago
- ☆19Mar 21, 2024Updated last year
- Network construction Algorithm☆22Sep 5, 2024Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- ☆19Nov 8, 2022Updated 3 years ago
- Website☆16Aug 30, 2025Updated 5 months ago
- ☆22May 6, 2022Updated 3 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Jul 8, 2024Updated last year
- ☆27Feb 4, 2024Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Adversarial Non-linear Independent Component Analysis☆50Oct 17, 2017Updated 8 years ago
- ☆25Aug 20, 2024Updated last year
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Apr 26, 2022Updated 3 years ago
- ☆28Jul 18, 2024Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆27Oct 29, 2024Updated last year
- Statistical Inference and Sure Independence Screening via Ball Statistics☆31Jun 21, 2025Updated 7 months ago