VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.
☆23May 7, 2023Updated 2 years ago
Alternatives and similar repositories for vidhop
Users that are interested in vidhop are comparing it to the libraries listed below
Sorting:
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Jan 5, 2022Updated 4 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computati…☆17Nov 7, 2021Updated 4 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 7 months ago
- ☆23May 13, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 7 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆17Dec 1, 2025Updated 3 months ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- ☆35Jun 26, 2025Updated 8 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆22Sep 29, 2025Updated 5 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- ☆15Oct 7, 2025Updated 5 months ago
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 3 years ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Deep learning multi-label classifier of non-coding DNA sequences☆11Mar 3, 2020Updated 6 years ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Updated this week
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- ☆17May 26, 2022Updated 3 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆18May 13, 2021Updated 4 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆23May 29, 2025Updated 9 months ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 3 months ago
- ☆28Aug 26, 2025Updated 6 months ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆24Apr 22, 2020Updated 5 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- A Full Featured Multiple Sequence Alignment Editor.☆26May 21, 2018Updated 7 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago