rnajena / vidhop
VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.
☆18Updated last year
Related projects: ⓘ
- Predict prokaryotic host for phage metagenomic sequences☆50Updated this week
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆27Updated 6 years ago
- ☆16Updated 6 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆34Updated 2 years ago
- ☆23Updated 7 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated last month
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆12Updated last year
- deep learning gene finder☆22Updated last week
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 3 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆59Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- ☆29Updated 9 months ago
- ☆18Updated 2 years ago
- ☆25Updated last year
- ☆10Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 5 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated last week
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- Follow up to Grace Blackwell's 661k dataset, for 2023☆75Updated last week
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆34Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆41Updated 3 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆38Updated last month
- ☆16Updated 3 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆46Updated 8 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆18Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆13Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆14Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆16Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆27Updated 2 years ago