Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
☆19Apr 15, 2026Updated 5 months ago
Alternatives and similar repositories for zoonotic_rank
Users that are interested in zoonotic_rank are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Mar 20, 2017Updated 9 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last month
- ☆22Jun 1, 2026Updated 3 months ago
- VIGOR4☆24Aug 15, 2025Updated last year
- An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)☆14Jan 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Feb 27, 2020Updated 6 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 3 months ago
- Source code for the DeepViral paper☆12Mar 17, 2021Updated 5 years ago
- A selenium spider for GISAID☆11Apr 10, 2023Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 8 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.☆16Sep 27, 2024Updated 2 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆27Updated this week
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆16Aug 6, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Jul 13, 2021Updated 5 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Dec 22, 2025Updated 9 months ago
- ☆16Oct 7, 2025Updated 11 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆19Apr 16, 2026Updated 5 months ago
- ☆35Oct 6, 2025Updated 11 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- Exploring the "dusk matter" of the RNA virosphere☆40Mar 25, 2022Updated 4 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆45Oct 9, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 5 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆40Updated this week
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Epidemiological modeling framework for pathogen population genetics and evolution.☆19Oct 7, 2024Updated last year
- Fast Effect Plots in R☆23Dec 29, 2025Updated 8 months ago