Primalscheme3. Generation of highly multiplex primerschemes
☆22Dec 4, 2025Updated 3 months ago
Alternatives and similar repositories for primalscheme3
Users that are interested in primalscheme3 are comparing it to the libraries listed below
Sorting:
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last week
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last week
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Sep 30, 2025Updated 5 months ago
- Visualization tool for genetic reassortment☆21Nov 1, 2025Updated 4 months ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- a tool for designing primer panels for multiplex PCR.☆106Feb 5, 2024Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Apr 24, 2025Updated 10 months ago
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 5 months ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- Workflow for viral analysis guided by reference☆17Feb 19, 2026Updated 2 weeks ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 7 years ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆17Dec 1, 2025Updated 3 months ago
- design common and specific primer for LAMP using the whole genome☆14Feb 12, 2026Updated 3 weeks ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 2 years ago
- The ARTIC fieldbioinformatics pipeline☆130Feb 24, 2026Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated last month
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆22Sep 29, 2025Updated 5 months ago
- ☆15Oct 7, 2025Updated 4 months ago
- Find endogenous viral elements in genomes☆21Sep 24, 2025Updated 5 months ago
- ☆27Jul 2, 2024Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 9 months ago
- ☆36Feb 12, 2024Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆24Feb 25, 2026Updated last week
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Updated this week
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆50Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- ☆17Jul 27, 2023Updated 2 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Oct 7, 2024Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated this week
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago