pereiramemo / BiG-MExLinks
BiG-MEx implementation as Docker images and R packages
☆13Updated 3 years ago
Alternatives and similar repositories for BiG-MEx
Users that are interested in BiG-MEx are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- ☆45Updated last year
- ☆21Updated 4 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- IslandPath standalone software☆32Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 7 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 2 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Strain Resolution ON Graphs☆47Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 3 months ago