Alternatives and similar repositories for non-coding-DNA-classifier

Users that are interested in non-coding-DNA-classifier are comparing it to the libraries listed below

• jdcla / DNA-transformer
  ☆34Updated 3 years ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆82Updated last year
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆95Updated 2 years ago
• kundajelab / DART-Eval
  ☆40Updated last month
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆146Updated last year
• HLTCHKUST / snp2vec
  Code and dataset for SNP2Vec paper
  ☆21Updated 2 years ago
• qiaoliuhub / AttnToCrispr
  ☆12Updated 5 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• kundajelab / MPRA-DragoNN
  Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…
  ☆12Updated 4 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆161Updated last year
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• melobio / LOGO
  ☆19Updated 2 years ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated 2 years ago
• QData / DeepDiffChrome
  "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
  ☆21Updated 5 years ago
• jimmyyhwu / deepsea
  DeepSEA in TensorFlow
  ☆29Updated 8 years ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆85Updated last week
• bm2-lab / DeepCRISPR
  ☆66Updated 2 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆22Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆39Updated 2 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆108Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆50Updated 6 years ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 5 months ago