Rvbens / non-coding-DNA-classifier
Deep learning multi-label classifier of non-coding DNA sequences
☆13Updated 4 years ago
Related projects: ⓘ
- ☆13Updated 4 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 4 years ago
- ☆34Updated 2 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆24Updated 5 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆76Updated 2 weeks ago
- Predicting gene expression levels from genomic sequences☆48Updated 4 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆47Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 4 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆36Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆41Updated last month
- ☆19Updated last year
- ☆9Updated 4 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆22Updated 4 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- Function prediction using a deep ontology-aware classifier☆77Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆40Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆39Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 3 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 5 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆62Updated 5 months ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆24Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- ☆22Updated 3 years ago
- ☆23Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- ☆14Updated 7 years ago
- ☆17Updated 3 years ago