Rvbens / non-coding-DNA-classifier
Deep learning multi-label classifier of non-coding DNA sequences
☆13Updated 4 years ago
Alternatives and similar repositories for non-coding-DNA-classifier:
Users that are interested in non-coding-DNA-classifier are comparing it to the libraries listed below
- ☆13Updated 4 years ago
- ☆34Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 4 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆45Updated 5 months ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago
- ☆10Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆33Updated 3 months ago
- ☆23Updated last year
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Updated 6 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆50Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- ☆59Updated last year
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 3 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆28Updated 3 years ago
- ☆19Updated 4 years ago
- ☆17Updated 10 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- ☆33Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆38Updated 3 years ago
- ☆25Updated last month
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- Protein sequence classification with self-supervised pretraining☆83Updated 3 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆65Updated last month
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆53Updated 3 weeks ago
- MHC Class I and Class II neoantigen binding prediction☆26Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆94Updated last year
- ☆18Updated 2 years ago