cgat-developers / cgat-appsLinks
cgat-apps repository
☆34Updated 4 months ago
Alternatives and similar repositories for cgat-apps
Users that are interested in cgat-apps are comparing it to the libraries listed below
Sorting:
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- ☆28Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆29Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Hitting associations with k-mers☆45Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆21Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- ORF prediction using python☆11Updated 3 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Updated last year
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago