cgat-developers / cgat-appsLinks
cgat-apps repository
☆34Updated 2 months ago
Alternatives and similar repositories for cgat-apps
Users that are interested in cgat-apps are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- ☆21Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- ☆32Updated last year
- Evolutionary Transcriptomics with R☆43Updated 2 weeks ago
- toolkit to process gtf files☆17Updated 3 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆31Updated 2 weeks ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- ☆22Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- A python package and a set of shell commands to handle GTF files☆48Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 7 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Master of Pores 2☆23Updated 6 months ago
- ☆16Updated last year
- processing 10x genomics reads☆26Updated 5 years ago