cgat-developers / cgat-apps
cgat-apps repository
☆34Updated last month
Alternatives and similar repositories for cgat-apps:
Users that are interested in cgat-apps are comparing it to the libraries listed below
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 2 weeks ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- ☆21Updated 11 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- ☆16Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 8 months ago
- Long read to rMATS☆31Updated 2 years ago
- ☆35Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆26Updated last week
- A catalogue of available long read sequencing data analysis tools☆78Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Variant catalogue pipeline☆25Updated last week
- processing 10x genomics reads☆25Updated 5 years ago