cgat-developers / cgat-apps
cgat-apps repository
☆34Updated 3 months ago
Alternatives and similar repositories for cgat-apps:
Users that are interested in cgat-apps are comparing it to the libraries listed below
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 4 months ago
- Error correction of ONT transcript reads☆59Updated last year
- ☆21Updated 9 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated this week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- ☆33Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Master of Pores 2☆23Updated 3 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 11 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated last month
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 11 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Long read to rMATS☆31Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago