cgat-developers / cgat-apps
cgat-apps repository
☆34Updated 2 months ago
Alternatives and similar repositories for cgat-apps:
Users that are interested in cgat-apps are comparing it to the libraries listed below
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- Evolutionary Transcriptomics with R☆42Updated last week
- ☆28Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 5 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated 4 months ago
- Adapters for trimming☆30Updated 6 years ago
- Master of Pores 2☆23Updated 2 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- ☆21Updated 8 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆32Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆18Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated this week
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆34Updated 2 months ago
- ☆35Updated last year
- ☆15Updated last year
- ☆20Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 9 months ago