cgat-apps repository
☆37Jul 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for cgat-apps
Users that are interested in cgat-apps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cgat-flow repository☆16May 10, 2026Updated 3 months ago
- Core functionality of the CGAT code☆34Mar 8, 2026Updated 5 months ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆123Nov 8, 2018Updated 7 years ago
- Collection of CGAT NGS Pipelines☆43Nov 8, 2018Updated 7 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python programs for processing GFF3 files☆105Jul 29, 2026Updated 2 weeks ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated 2 months ago
- ☆16May 7, 2023Updated 3 years ago
- Version 5 of the CAFE phylogenetics software☆176Mar 16, 2026Updated 4 months ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 6 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 10 months ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- HyPhy standalone analyses☆56Jan 5, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 7 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆29Feb 28, 2024Updated 2 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 6 months ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 7 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Nov 9, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- Best practices and workflow for genome annotation☆78Apr 14, 2025Updated last year
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Protein interaction calculator☆15Feb 11, 2025Updated last year
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago