cgat-developers / cgat-appsLinks
cgat-apps repository
☆34Updated 10 months ago
Alternatives and similar repositories for cgat-apps
Users that are interested in cgat-apps are comparing it to the libraries listed below
Sorting:
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- ☆28Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- toolkit to process gtf files☆17Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- new repo☆28Updated 4 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 8 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- CDS prediction in transcripts☆24Updated 11 months ago
- Distribution of TEs and their relationship to genes in host genome☆24Updated 2 years ago
- ☆17Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆11Updated 3 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago