santiagosnchez / vcf2fasta
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
☆47Updated 4 months ago
Alternatives and similar repositories for vcf2fasta:
Users that are interested in vcf2fasta are comparing it to the libraries listed below
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated 8 months ago
- perSVade: personalized Structural Variation detection☆38Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- ☆43Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- PacBio BAM toolkit☆39Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆75Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- ☆76Updated 4 months ago
- A pipeline that accepts a VCF file to run through Admixture☆57Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated last month
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- A program for assessing the T2T genome continuity☆64Updated 2 months ago
- Neural network classification of TE☆87Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- Error correction of ONT transcript reads☆59Updated last year
- A list of software for pangenomics☆100Updated this week
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 4 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- High-precision TE Annotator☆92Updated this week
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- Application of pan-genome for population☆102Updated 4 months ago
- Useful bioinformatic scripts☆54Updated 2 months ago