santiagosnchez / vcf2fastaLinks
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
☆51Updated last month
Alternatives and similar repositories for vcf2fasta
Users that are interested in vcf2fasta are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A program for assessing the T2T genome continuity☆83Updated last week
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- ☆44Updated 8 years ago
- Application of pan-genome for population☆108Updated 10 months ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 5 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Show pangenome graphs in an easy way☆56Updated 3 weeks ago
- ☆64Updated last month
- perSVade: personalized Structural Variation detection☆40Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- A list of software for pangenomics☆125Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- PacBio BAM toolkit☆46Updated 6 months ago
- ☆32Updated 4 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆81Updated this week
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 7 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago