santiagosnchez / vcf2fasta
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
☆47Updated last month
Related projects ⓘ
Alternatives and complementary repositories for vcf2fasta
- Error correction of ONT transcript reads☆58Updated last year
- ☆50Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- ☆43Updated 7 years ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- paml documentation and tutorials☆47Updated last year
- ☆72Updated last month
- perSVade: personalized Structural Variation detection☆37Updated 5 months ago
- A program for assessing the T2T genome continuity☆53Updated last month
- Analysis of convergence between organismal traits and DNA/protein sequences☆46Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆45Updated 5 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Synteny Imager☆60Updated 2 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Phased assembly variant caller☆98Updated 3 weeks ago
- A list of software for pangenomics☆85Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Pangenome-based genome inference☆114Updated this week
- tomato graph pangenome☆73Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆42Updated 6 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆52Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago