Taxonomic classification of DNA sequences
☆58Jul 2, 2024Updated 2 years ago
Alternatives and similar repositories for bertax
Users that are interested in bertax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training scripts for BERTax☆12Jun 12, 2024Updated 2 years ago
- ☆23Jan 18, 2026Updated 9 months ago
- ☆14Jun 17, 2023Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Sep 27, 2024Updated 2 years ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated 2 months ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Optimal haplotype assembly of polyploids☆10Mar 29, 2019Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Reference-guided multiple sequence alignment of viral genomes☆75Oct 27, 2026Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆63Sep 10, 2026Updated last month
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- A transformer model for DNA barcode representation learning and taxonomic classification.☆18Oct 19, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 6 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- The binning tool with dynamic contrastive learning and deep language model☆28Oct 21, 2026Updated last week
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Oct 28, 2026Updated last week
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆137Jan 1, 2026Updated 10 months ago
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 5 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- 🪡Correct and scaffold assemblies using long reads☆62Apr 1, 2026Updated 7 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆181Sep 19, 2024Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- tiara – a tool for DNA sequence classification☆93Mar 2, 2024Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 3 months ago
- ☆20Sep 16, 2026Updated last month
- ☆12Jun 3, 2025Updated last year