Taxonomic classification of DNA sequences
☆57Jul 2, 2024Updated 2 years ago
Alternatives and similar repositories for bertax
Users that are interested in bertax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training scripts for BERTax☆12Jun 12, 2024Updated 2 years ago
- ☆23Jan 18, 2026Updated 8 months ago
- ☆14Jun 17, 2023Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆62Sep 10, 2026Updated last week
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 5 months ago
- A transformer model for DNA barcode representation learning and taxonomic classification.☆17Aug 31, 2026Updated 3 weeks ago
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated last month
- ☆16Jan 10, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 4 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-guided multiple sequence alignment of viral genomes☆72May 30, 2026Updated 3 months ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- ☆12Jun 3, 2025Updated last year
- tiara – a tool for DNA sequence classification☆89Mar 2, 2024Updated 2 years ago
- Convert HAL to VG☆24Sep 15, 2026Updated last week
- ☆20Sep 16, 2026Updated last week
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 2 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆76Jul 22, 2023Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 3 weeks ago
- ☆59Dec 12, 2023Updated 2 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 7 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 5 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23May 7, 2023Updated 3 years ago