Taxonomic classification of DNA sequences
☆57Jul 2, 2024Updated last year
Alternatives and similar repositories for bertax
Users that are interested in bertax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- ☆22Jan 18, 2026Updated 2 months ago
- A transformer model for DNA barcode representation learning and taxonomic classification.☆16Updated this week
- ☆14Jun 17, 2023Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Jun 30, 2025Updated 8 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 3 weeks ago
- ☆16Jan 10, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆71Nov 6, 2025Updated 4 months ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- ☆11Jun 3, 2025Updated 9 months ago
- tiara – a tool for DNA sequence classification☆80Mar 2, 2024Updated 2 years ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated last month
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Jul 22, 2023Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 5 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 7 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆203Aug 25, 2025Updated 6 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- More scalable dereplication for metagenome assembled genomes☆78Mar 8, 2026Updated 2 weeks ago
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23May 7, 2023Updated 2 years ago
- ☆29Aug 7, 2025Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago