rnajena / bertaxLinks
Taxonomic classification of DNA sequences
☆54Updated last year
Alternatives and similar repositories for bertax
Users that are interested in bertax are comparing it to the libraries listed below
Sorting:
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated 11 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- Tiberius is a deep learning gene finder.☆67Updated last week
- ☆30Updated 6 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 4 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆48Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated 3 weeks ago
- ☆35Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 7 months ago
- ☆26Updated 3 weeks ago
- ☆32Updated 5 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last week
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week
- ☆17Updated 3 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 7 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆43Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A package to annotate protein sequences☆59Updated 4 months ago
- A program for divvying or partially filtering multiple sequence alignments☆26Updated 5 years ago
- tree visualization for tree + annotation data☆39Updated last month