rnajena / bertaxLinks
Taxonomic classification of DNA sequences
☆57Updated last year
Alternatives and similar repositories for bertax
Users that are interested in bertax are comparing it to the libraries listed below
Sorting:
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated this week
- ☆39Updated 2 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 8 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆80Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Tiberius is a deep learning gene finder.☆87Updated last week
- Python bindings for the TaxonKit library☆41Updated last month
- ☆39Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆127Updated 4 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated this week
- Protein Alignment and Detection Interface☆60Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆31Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 10 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Updated 7 years ago
- ☆33Updated 4 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- A program for detection of tRNA genes☆80Updated 3 years ago