Alternatives and similar repositories for bertax_training

Users that are interested in bertax_training are comparing it to the libraries listed below

• congyulu-bioinfo / PHP
  Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…
  ☆11Updated 4 years ago
• lbcb-sci / GNNome
  A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
  ☆48Updated last month
• rnajena / bertax
  Taxonomic classification of DNA sequences
  ☆55Updated last year
• burstein-lab / genomic-nlp
  ☆27Updated last year
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 7 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• nbrg-ppcu / prokbert
  ☆18Updated this week
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆25Updated 4 years ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆23Updated 10 months ago
• ahoarfrost / LookingGlass
  pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning
  ☆15Updated 3 years ago
• HUST-NingKang-Lab / MGM
  MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
  ☆35Updated 6 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• gussow / seeker
  ☆33Updated 4 years ago
• xuehansheng / RepBin
  [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning
  ☆23Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• nafizh / NeuBI
  Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
  ☆18Updated 2 years ago
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated 11 months ago
• KennthShang / PhaMer
  Accurate identification of bacteriophages from metagenomic data using Transformer
  ☆22Updated 11 months ago
• raphael-upmc / proteinClusteringPipeline
  a pipeline to cluster proteins into families
  ☆10Updated 5 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 4 months ago
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆13Updated 6 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated last week
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 6 months ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆21Updated 6 years ago
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆28Updated 2 months ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆19Updated 8 months ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆15Updated last year
• KennthShang / PhaGCN
  GCN classifier for phage taxanomy classification
  ☆31Updated 11 months ago