rnajena / bertax_trainingLinks
Training scripts for BERTax
☆12Updated last year
Alternatives and similar repositories for bertax_training
Users that are interested in bertax_training are comparing it to the libraries listed below
Sorting:
- Taxonomic classification of DNA sequences☆57Updated last year
- Deep learning for Metagenome Assembly Error Detection☆25Updated 5 years ago
- ☆11Updated 9 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆36Updated 8 months ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Updated 2 years ago
- Learning to untangle genome assembly with graph neural networks.☆72Updated last year
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Updated 3 years ago
- ☆27Updated last year
- ☆18Updated 3 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- Interactive tutorials for using scikit-bio in biological research☆43Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- ☆17Updated 4 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆50Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 3 weeks ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆23Updated last year
- ☆19Updated 5 years ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 11 months ago
- ☆33Updated 4 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago
- GCN classifier for phage taxanomy classification☆31Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆23Updated 9 months ago
- AMBER: Assessment of Metagenome BinnERs☆32Updated 11 months ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- MGnify API toolkit☆19Updated 10 months ago