rnajena / bertax_trainingLinks
Training scripts for BERTax
☆9Updated 11 months ago
Alternatives and similar repositories for bertax_training
Users that are interested in bertax_training are comparing it to the libraries listed below
Sorting:
- Taxonomic classification of DNA sequences☆53Updated 11 months ago
- ☆25Updated 9 months ago
- GCN classifier for phage taxanomy classification☆31Updated 7 months ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- ☆11Updated 2 months ago
- Host prediction for phages☆25Updated 7 months ago
- ☆15Updated this week
- Graph convolutional neural network for host prediction☆19Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 5 months ago
- ☆18Updated 4 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated 7 months ago
- ☆32Updated 3 years ago
- MicroPheno Project☆13Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆17Updated 5 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 7 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆14Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 8 months ago
- ☆17Updated 3 years ago
- ☆32Updated 3 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆65Updated this week
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated last month
- AMBER: Assessment of Metagenome BinnERs☆30Updated 4 months ago
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- metabolic heatmap☆20Updated 6 years ago