rnajena / bertax_training
Training scripts for BERTax
☆9Updated 8 months ago
Alternatives and similar repositories for bertax_training:
Users that are interested in bertax_training are comparing it to the libraries listed below
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Taxonomic classification of DNA sequences☆51Updated 8 months ago
- ☆14Updated 2 weeks ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆12Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆13Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆62Updated 5 months ago
- MicroPheno Project☆13Updated 2 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆52Updated 3 weeks ago
- ☆24Updated 6 months ago
- Protein Sequence Annotation with Language Models☆19Updated 4 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated this week
- ☆24Updated last year
- Pipeline for major biological analyses.☆34Updated 2 years ago
- GCN classifier for phage taxanomy classification☆31Updated 4 months ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆16Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- Host prediction for phages☆23Updated 4 months ago
- ☆31Updated 3 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- Graph convolutional neural network for host prediction☆19Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆20Updated last week