rnajena / bertax_training
Training scripts for BERTax
☆9Updated 11 months ago
Alternatives and similar repositories for bertax_training
Users that are interested in bertax_training are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- ☆11Updated 2 months ago
- Taxonomic classification of DNA sequences☆53Updated 10 months ago
- GCN classifier for phage taxanomy classification☆31Updated 6 months ago
- ☆25Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- Deep learning embedding for nucleotide sequences☆18Updated last month
- ☆15Updated last month
- Host prediction for phages☆25Updated 6 months ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Graph convolutional neural network for host prediction☆19Updated 2 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆50Updated last month
- antimicrobial peptide prediction in R☆29Updated 4 months ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆21Updated 6 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆18Updated last week
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 6 months ago
- AMBER: Assessment of Metagenome BinnERs☆30Updated 4 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆50Updated 11 months ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆12Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆13Updated last month
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 4 months ago
- ☆31Updated 2 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 8 months ago