A transformer model for DNA barcode representation learning and taxonomic classification.
☆16Apr 27, 2026Updated this week
Alternatives and similar repositories for BarcodeBERT
Users that are interested in BarcodeBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Dec 15, 2025Updated 4 months ago
- A multimodal dataset of 5M insect specimens for biodiversity research.☆21Updated this week
- The full code base used for our 2020 CVPR paper "3D-ZeF: A 3D Zebrafish Tracking Benchmark Dataset"☆15Sep 5, 2022Updated 3 years ago
- Taxonomic classification of DNA sequences☆57Jul 2, 2024Updated last year
- ☆16Mar 13, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Google foobar challenge!☆10Sep 10, 2017Updated 8 years ago
- ☆46Sep 13, 2023Updated 2 years ago
- ☆11Sep 27, 2024Updated last year
- ☆14Jul 4, 2015Updated 10 years ago
- ☆21Nov 19, 2021Updated 4 years ago
- Official PyTorch implementation of Agglomerative Token Clustering presented at ECCV 2024☆20Sep 19, 2024Updated last year
- ☆16Apr 16, 2026Updated 2 weeks ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- ☆20Feb 10, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pytorch implementation for "Iterative Human and Automated Identification of Wildlife Images" (Nature -Machine Intelligence, 2021)☆19Nov 3, 2021Updated 4 years ago
- creating reference databases for amplicon sequencing☆49Jan 13, 2026Updated 3 months ago
- Othello game and my AI practicing platform in Java☆15Oct 11, 2017Updated 8 years ago
- Machine Learning with Digital Signal Processing☆22Jan 21, 2019Updated 7 years ago
- ☆23Feb 23, 2023Updated 3 years ago
- Linear Attention for Efficient Bidirectional Sequence Modeling☆16May 13, 2025Updated 11 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Code for AAAI 2022 paper Unsupervised Sentence Representation via Contrastive Learning with Mixing Negatives☆23Jun 14, 2022Updated 3 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆28Aug 31, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Apr 23, 2025Updated last year
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32Apr 25, 2026Updated last week
- ☆21Jan 23, 2026Updated 3 months ago
- Official implementation of "SViT: Revisiting Token Pruning for Object Detection and Instance Segmentation"☆36Dec 5, 2023Updated 2 years ago
- Biodiversity data Visualizations in R☆29Nov 25, 2025Updated 5 months ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- PathPiece tokenizer☆14Nov 10, 2024Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- ☆20Aug 14, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ArXiv 每日论文推送助手 自动抓取 ArXiv 最新 AI 论文，使用 DeepSeek 进行深度分析，并推送到飞书。☆50Feb 5, 2026Updated 2 months ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 10 months ago
- Print barcodes in R☆10Oct 27, 2020Updated 5 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆74Oct 14, 2023Updated 2 years ago
- A dataset of 1M insect specimens with DNA barcodes, taxonomy, and images.☆33Apr 30, 2025Updated last year
- The code impliments for paper "MHNF: Multi-hop Heterogeneous Neighborhood information Fusion graph representation learning.”☆11Oct 29, 2023Updated 2 years ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Apr 19, 2026Updated 2 weeks ago