☆11Sep 11, 2024Updated 2 years ago
Alternatives and similar repositories for gedmap
Users that are interested in gedmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- a GFA toolkit☆13Oct 4, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆18Nov 1, 2021Updated 5 years ago
- /ˈskuzi/☆11Sep 30, 2026Updated last month
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- parallel algorithms for small hitting set approximations☆11Apr 29, 2021Updated 5 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆14Oct 14, 2020Updated 6 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated last year
- GBZ file format for pangenome graphs☆48Updated this week
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- For more details about Mobster please see☆10Dec 7, 2022Updated 3 years ago
- Optimal haplotype assembly of polyploids☆10Mar 29, 2019Updated 7 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 9, 2022Updated 3 years ago
- ALeS: Adaptive-length spaced-seed design☆10Jun 15, 2021Updated 5 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- ttt☆10Apr 12, 2026Updated 6 months ago
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- ☆11Aug 2, 2025Updated last year
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Lightweight String Graph Construction☆11May 10, 2023Updated 3 years ago
- Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018☆20Aug 16, 2018Updated 8 years ago
- ☆32Mar 27, 2024Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆109Oct 26, 2026Updated last week