Alternatives and similar repositories for BUSCO_phylogenomics:

Users that are interested in BUSCO_phylogenomics are comparing it to the libraries listed below

• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• BenoitMorel / GeneRax
  ☆70Updated last year
• rhysf / Synima
  Synteny Imager
  ☆62Updated 8 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆52Updated 3 weeks ago
• DessimozLab / OMArk
  ☆71Updated 2 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• TheBrownLab / PhyloFisher
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…
  ☆31Updated this week
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆41Updated last month
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆102Updated last year
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆37Updated last month
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆50Updated 3 months ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆56Updated 2 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆65Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated last month
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆29Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆88Updated 2 years ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆49Updated last year
• JLSteenwyk / PhyKIT
  a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
  ☆69Updated this week
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆99Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 4 years ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆39Updated 3 weeks ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆59Updated 3 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆55Updated this week
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆21Updated 2 years ago
• thackl / detectEVE
  Find endogenous viral elements in genomes
  ☆13Updated 3 months ago
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 4 years ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆83Updated last year