BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
☆95Mar 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for BUSCO_phylogenomics
Users that are interested in BUSCO_phylogenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆20Jan 14, 2026Updated 2 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆93Updated this week
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last month
- Version 5 of the CAFE phylogenetics software☆164Mar 16, 2026Updated 2 weeks ago
- ☆91Dec 3, 2025Updated 3 months ago
- Dinoflagellate Annotation Workflow☆15Oct 3, 2022Updated 3 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- ☆237Jan 24, 2025Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 6 months ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- haplotypic duplication identification tool☆277Oct 30, 2025Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- Portable solution to generate genome alignment chains using lastz☆63Dec 20, 2025Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 4 months ago
- ☆16Feb 20, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 8 months ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- ☆23Mar 17, 2026Updated last week
- ☆12Feb 16, 2026Updated last month
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- ☆24Jun 8, 2022Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Jun 30, 2023Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆200Updated this week
- Taxonomy-aware DNA sequence processing toolkit☆34Feb 23, 2026Updated last month
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Nov 21, 2025Updated 4 months ago
- General tools for genomic analyses.☆388Feb 28, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year