BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
☆106Jun 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for BUSCO_phylogenomics
Users that are interested in BUSCO_phylogenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆91Jun 26, 2026Updated 3 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 6 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆35Sep 11, 2025Updated 10 months ago
- Multithreaded read analysis☆25May 24, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- oxford dot plots☆173Jul 2, 2026Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆172Mar 16, 2026Updated 4 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆569Feb 14, 2024Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆67Updated this week
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- Assembly statistic visualisation☆96Dec 22, 2023Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 7 months ago
- use paired-end transcriptome reads to scaffold genomes☆12May 30, 2019Updated 7 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆390Feb 13, 2025Updated last year
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- Tiberius is a deep learning gene finder.☆125Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆208Nov 23, 2025Updated 7 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Multi-genome synteny block visualization tool☆63Jul 6, 2026Updated 2 weeks ago
- ☆251Jan 24, 2025Updated last year
- ☆79Jun 2, 2023Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- IQ-TREE version 3: software for phylogenetics☆146Updated this week
- Phyling: phylogenetic inference from annotated genomes☆33Updated this week
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- Fast genome analysis from unassembled short reads☆324Apr 8, 2024Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- General tools for genomic analyses.☆392Mar 25, 2026Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago