jamiemcg / BUSCO_phylogenomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
☆52Updated last month
Related projects ⓘ
Alternatives and complementary repositories for BUSCO_phylogenomics
- ☆25Updated this week
- Synteny Imager☆60Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- ☆68Updated 10 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆46Updated 4 months ago
- NLR-Annotator upload☆60Updated last year
- ☆61Updated 7 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆31Updated 3 weeks ago
- Version 5 of the CAFE phylogenetics software☆114Updated this week
- paml documentation and tutorials☆47Updated last year
- ☆72Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆34Updated 6 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- ☆70Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆38Updated 2 weeks ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Reference-free profiling of polyploid genomes☆105Updated 4 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆10Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆93Updated 4 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆37Updated 4 years ago
- Analyses pipelines that I use for my work☆12Updated 3 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆56Updated last month
- Mobile Genetic Elements Retrieving Tool☆15Updated 2 years ago
- Neural network classification of TE☆86Updated 2 years ago