jamiemcg / BUSCO_phylogenomicsLinks
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
☆71Updated 8 months ago
Alternatives and similar repositories for BUSCO_phylogenomics
Users that are interested in BUSCO_phylogenomics are comparing it to the libraries listed below
Sorting:
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆32Updated 2 weeks ago
- ☆27Updated 3 months ago
- ☆74Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 2 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆55Updated last week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- Synteny Imager☆63Updated 10 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Plastid Genome Annotator☆51Updated 4 years ago
- ☆71Updated 3 weeks ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆27Updated last month
- NLR-Annotator upload☆68Updated last year
- ☆79Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆97Updated 2 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 5 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last week
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- Analyses pipelines that I use for my work☆12Updated 3 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆54Updated 2 weeks ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last week
- paml documentation and tutorials☆58Updated last month
- ☆44Updated 8 years ago
- NLR annotation tool☆28Updated last year