Alternatives and similar repositories for exonerate

Users that are interested in exonerate are comparing it to the libraries listed below

• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆93Updated 2 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆90Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆94Updated 9 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 3 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆112Updated 4 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆102Updated last month
• CshlSiepelLab / phast
  PHAST
  ☆80Updated last week
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆48Updated 11 months ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Updated 7 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆120Updated 2 months ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆109Updated this week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆122Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆93Updated 2 weeks ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆166Updated 3 weeks ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆107Updated 2 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆133Updated 3 years ago
• kjenike / panagram
  ☆68Updated last week
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated 3 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆110Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆57Updated 5 months ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆27Updated 3 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago