A fork of exonerate: a generic tool for sequence alignment
☆72Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for exonerate
Users that are interested in exonerate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- source code for EVM☆124Nov 29, 2024Updated last year
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Genome Annotation Pipeline☆44Aug 20, 2024Updated last year
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Version 5 of the CAFE phylogenetics software☆170Mar 16, 2026Updated 2 months ago
- Just Annotate My Genome☆19May 21, 2026Updated 3 weeks ago
- PASA software☆200Feb 12, 2025Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated 3 weeks ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 3 weeks ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated last month
- ☆27Dec 15, 2025Updated 5 months ago
- Eukaryotic Genome Annotation Pipeline☆387Updated this week
- ☆22Mar 12, 2026Updated 2 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 7 months ago
- Align multiple amino acid or nucleotide sequences.☆86Sep 17, 2020Updated 5 years ago
- Gene prediction software☆70Oct 22, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆145Nov 6, 2024Updated last year
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆305Jun 4, 2026Updated last week
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 3 years ago
- Visualize whole genome alignments as linear maps☆74Mar 27, 2026Updated 2 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆167Jun 3, 2026Updated last week
- A program for detection of tRNA genes☆89Nov 16, 2022Updated 3 years ago
- 3D de novo assembly (3D DNA) pipeline☆226Nov 29, 2023Updated 2 years ago
- TransDecoder source☆305Mar 22, 2026Updated 2 months ago