Alternatives and similar repositories for exonerate

Users that are interested in exonerate are comparing it to the libraries listed below

• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• CshlSiepelLab / phast
  PHAST
  ☆75Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆99Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated 2 weeks ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆112Updated last year
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆85Updated 9 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆117Updated 9 months ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 3 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆109Updated 2 weeks ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated 2 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated 3 weeks ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆48Updated 2 years ago
• kjenike / panagram
  ☆66Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆84Updated this week
• SorenKarst / longread_umi
  ☆79Updated 4 years ago
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆31Updated last year
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 7 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆102Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated this week
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago